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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
March 19, 2002; 99 (6)
Index By Author
Cover Photo
FROM THE COVER
Predator-prey dynamics in kelp forests
Novel DNA glycosylase and oxidative damage repair
Landscapes shape epidemic outbreaks
Ancient eukaryotes splice introns
Host inflammation aids virus replication
Commentaries
Commentary
:
Tomas Ganz
Epithelia: Not just physical barriers
PNAS
2002
99
:
3357
-
3358
;
doi:10.1073/pnas.072073199
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See companion article on page
3902
in issue 6 of volume 99
Commentary
:
Patricia J. Johnson
Spliceosomal introns in a deep-branching eukaryote: The splice of life
PNAS
2002
99
:
3359
-
3361
;
doi:10.1073/pnas.072084199
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3701
in issue 6 of volume 99
Commentary
:
Edward S. Mocarski, Jr.
Virus self-improvement through inflammation: No pain, no gain
PNAS
2002
99
:
3362
-
3364
;
doi:10.1073/pnas.072075899
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3932
in issue 6 of volume 99
Commentary
:
Bryan Grenfell
Rivers dam waves of rabies
PNAS
2002
99
:
3365
-
3367
;
doi:10.1073/pnas.062049599
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3668
in issue 6 of volume 99
Commentary
:
Johan G. de Boer
A new mutator phenotype in breast cancer?
PNAS
2002
99
:
3368
-
3369
;
doi:10.1073/pnas.082095799
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3770
in issue 6 of volume 99
Physical Sciences
Applied Physical Sciences
Select this article
Physical Sciences - Applied Physical Sciences
:
Alexander Egner
,
Stefan Jakobs
,
and
Stefan W. Hell
Fast 100-nm resolution three-dimensional microscope reveals structural plasticity of mitochondria in live yeast
PNAS
2002
99
:
3370
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3375
;
doi:10.1073/pnas.052545099
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Chemistry
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Physical Sciences - Chemistry
:
Xin Xu
,
Richard P. Muller
,
and
William A. Goddard, III
The gas phase reaction of singlet dioxygen with water: A water-catalyzed mechanism
PNAS
2002
99
:
3376
-
3381
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052710099
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Physical Sciences - Chemistry
:
Matthias Hochgürtel
,
Heiko Kroth
,
Dorothea Piecha
,
Michael W. Hofmann
,
Claude Nicolau
,
Sonja Krause
,
Otmar Schaaf
,
Gabriele Sonnenmoser
,
and
Alexey V. Eliseev
Target-induced formation of neuraminidase inhibitors from in vitro virtual combinatorial libraries
PNAS
2002
99
:
3382
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3387
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052703799
Abstract
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Supporting Schemes
Computer Sciences
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Physical Sciences - Computer Sciences - Physical Sciences - Physics
:
P. Oscar Boykin
,
Tal Mor
,
Vwani Roychowdhury
,
Farrokh Vatan
,
and
Rutger Vrijen
Algorithmic cooling and scalable NMR quantum computers
PNAS
2002
99
:
3388
-
3393
;
doi:10.1073/pnas.241641898
Abstract
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Engineering
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Physical Sciences - Engineering - Biological Sciences - Biophysics
:
Song Li
,
Peter Butler
,
Yingxiao Wang
,
Yingli Hu
,
Dong Cho Han
,
Shunichi Usami
,
Jun-Lin Guan
,
and
Shu Chien
The role of the dynamics of focal adhesion kinase in the mechanotaxis of endothelial cells
PNAS
2002
99
:
3546
-
3551
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052018099
Abstract
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Supporting Movies
Physics
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Physical Sciences - Computer Sciences - Physical Sciences - Physics
:
P. Oscar Boykin
,
Tal Mor
,
Vwani Roychowdhury
,
Farrokh Vatan
,
and
Rutger Vrijen
Algorithmic cooling and scalable NMR quantum computers
PNAS
2002
99
:
3388
-
3393
;
doi:10.1073/pnas.241641898
Abstract
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Social Sciences
Psychology
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Social Sciences - Psychology
:
Thomas J. Palmeri
,
Randolph Blake
,
René Marois
,
Marci A. Flanery
,
and
William Whetsell, Jr.
The perceptual reality of synesthetic colors
PNAS
2002
99
:
4127
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4131
;
doi:10.1073/pnas.022049399
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Biological Sciences
Applied Biological Sciences
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Biological Sciences - Applied Biological Sciences
:
Mahmoud Desouky
,
Ravin Jugdaohsingh
,
Catherine R. McCrohan
,
Keith N. White
,
and
Jonathan J. Powell
Aluminum-dependent regulation of intracellular silicon in the aquatic invertebrate Lymnaea stagnalis
PNAS
2002
99
:
3394
-
3399
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.062478699
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Biological Sciences - Applied Biological Sciences
:
Philipp Mayer-Kuckuk
,
Debabrata Banerjee
,
Sundeep Malhotra
,
Mikhail Doubrovin
,
Marian Iwamoto
,
Tim Akhurst
,
Julius Balatoni
,
William Bornmann
,
Ronald Finn
,
Steven Larson
,
Yuman Fong
,
Juri Gelovani Tjuvajev
,
Ronald Blasberg
,
and
Joseph R. Bertino
Cells exposed to antifolates show increased cellular levels of proteins fused to dihydrofolate reductase: A method to modulate gene expression
PNAS
2002
99
:
3400
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3405
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.062036899
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Biological Sciences - Applied Biological Sciences
:
Günter Kraus
,
Rebeca Geffin
,
Gina Spruill
,
Andrea K. Young
,
Rachel Seivright
,
Diana Cardona
,
Jennifer Burzawa
,
and
H. James Hnatyszyn
Cross-clade inhibition of HIV-1 replication and cytopathology by using RNase P-associated external guide sequences
PNAS
2002
99
:
3406
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3411
;
doi:10.1073/pnas.052651199
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Biochemistry
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Biological Sciences - Biochemistry
:
Shi-Xian Deng
,
Narine Bharat
,
Marian C. Fischman
,
and
Donald W. Landry
Covalent modification of proteins by cocaine
PNAS
2002
99
:
3412
-
3416
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.042700599
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Biological Sciences - Biochemistry
:
Stephen M. Prince
,
Mark Achtman
,
and
Jeremy P. Derrick
Crystal structure of the OpcA integral membrane adhesin from Neisseria meningitidis
PNAS
2002
99
:
3417
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3421
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.062630899
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Biological Sciences - Biochemistry
:
R. A. Merrill
,
L. A. Plum
,
M. E. Kaiser
,
and
M. Clagett-Dame
A mammalian homolog of unc-53 is regulated by all - trans retinoic acid in neuroblastoma cells and embryos
PNAS
2002
99
:
3422
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3427
;
doi:10.1073/pnas.052017399
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Biological Sciences - Biochemistry
:
Qiulong Huang
,
Andrew M. Petros
,
Herbert W. Virgin
,
Stephen W. Fesik
,
and
Edward T. Olejniczak
Solution structure of a Bcl-2 homolog from Kaposi sarcoma virus
PNAS
2002
99
:
3428
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3433
;
doi:10.1073/pnas.062525799
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Biological Sciences - Biochemistry
:
Jonathan M. Wojciak
,
Dibyendu Sarkar
,
Arthur Landy
,
and
Robert T. Clubb
Arm-site binding by λ-integrase: Solution structure and functional characterization of its amino-terminal domain
PNAS
2002
99
:
3434
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3439
;
doi:10.1073/pnas.052017999
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Biological Sciences - Biochemistry
:
Christopher S. Hayes
,
Baundauna Bose
,
and
Robert T. Sauer
Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
PNAS
2002
99
:
3440
-
3445
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052707199
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Biological Sciences - Biochemistry
:
Frank Staubli
,
Thomas J. D. Jørgensen
,
Giuseppe Cazzamali
,
Michael Williamson
,
Camilla Lenz
,
Leif Søndergaard
,
Peter Roepstorff
,
and
Cornelis J. P. Grimmelikhuijzen
Molecular identification of the insect adipokinetic hormone receptors
PNAS
2002
99
:
3446
-
3451
;
doi:10.1073/pnas.052556499
Abstract
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Biological Sciences - Biochemistry
:
J. Klein-Seetharaman
,
P. J. Reeves
,
M. C. Loewen
,
E. V. Getmanova
,
J. Chung
,
H. Schwalbe
,
P. E. Wright
,
and
H. G. Khorana
Solution NMR spectroscopy of [α- 15 N]lysine-labeled rhodopsin: The single peak observed in both conventional and TROSY-type HSQC spectra is ascribed to Lys-339 in the carboxyl-terminal peptide sequence
PNAS
2002
99
:
3452
-
3457
;
doi:10.1073/pnas.052713999
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Biological Sciences - Biochemistry
:
José Antonio Márquez
,
Sonja Hasenbein
,
Brigitte Koch
,
Sonia Fieulaine
,
Sylvie Nessler
,
Robert B. Russell
,
Wolfgang Hengstenberg
,
and
Klaus Scheffzek
Structure of the full-length HPr kinase/phosphatase from Staphylococcus xylosus at 1.95 Å resolution: Mimicking the product/substrate of the phospho transfer reactions
PNAS
2002
99
:
3458
-
3463
;
doi:10.1073/pnas.052461499
Abstract
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Biological Sciences - Biochemistry
:
Georg Groth
Structure of spinach chloroplast F 1 -ATPase complexed with the phytopathogenic inhibitor tentoxin
PNAS
2002
99
:
3464
-
3468
;
doi:10.1073/pnas.052546099
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Biological Sciences - Biochemistry
:
Tom Wehrman
,
Benjamin Kleaveland
,
Jeng-Horng Her
,
Robert F. Balint
,
and
Helen M. Blau
Protein–protein interactions monitored in mammalian cells via complementation of β-lactamase enzyme fragments
PNAS
2002
99
:
3469
-
3474
;
doi:10.1073/pnas.062043699
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Biological Sciences - Biochemistry
:
Lan Guan
,
Franklin D. Murphy
,
and
H. Ronald Kaback
Surface-exposed positions in the transmembrane helices of the lactose permease of Escherichia coli determined by intermolecular thiol cross-linking
PNAS
2002
99
:
3475
-
3480
;
doi:10.1073/pnas.052703699
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Biological Sciences - Biochemistry
:
Michael Graham Espey
,
Sandhya Xavier
,
Douglas D. Thomas
,
Katrina M. Miranda
,
and
David A. Wink
Direct real-time evaluation of nitration with green fluorescent protein in solution and within human cells reveals the impact of nitrogen dioxide vs. peroxynitrite mechanisms
PNAS
2002
99
:
3481
-
3486
;
doi:10.1073/pnas.062604199
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Biological Sciences - Biochemistry
:
José Luis Vázquez-Ibar
,
Adam B. Weinglass
,
and
H. Ronald Kaback
Engineering a terbium-binding site into an integral membrane protein for luminescence energy transfer
PNAS
2002
99
:
3487
-
3492
;
published ahead of print
March 19, 2002
,
doi:10.1073/pnas.052703599
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Biological Sciences - Biochemistry
:
Laura Tsujikawa
,
Oleg V. Tsodikov
,
and
Pieter L. deHaseth
Interaction of RNA polymerase with forked DNA: Evidence for two kinetically significant intermediates on the pathway to the final complex
PNAS
2002
99
:
3493
-
3498
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.062487299
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Biological Sciences - Biochemistry
:
Haruichi Asahara
and
Olke C. Uhlenbeck
The tRNA Specificity of Thermus thermophilus EF-Tu
PNAS
2002
99
:
3499
-
3504
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052028599
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Biological Sciences - Biochemistry
:
Maddalena Fratelli
,
Hans Demol
,
Magda Puype
,
Simona Casagrande
,
Ivano Eberini
,
Mario Salmona
,
Valentina Bonetto
,
Manuela Mengozzi
,
Francis Duffieux
,
Emeric Miclet
,
Angela Bachi
,
Joel Vandekerckhove
,
Elisabetta Gianazza
,
and
Pietro Ghezzi
Identification by redox proteomics of glutathionylated proteins in oxidatively stressed human T lymphocytes
PNAS
2002
99
:
3505
-
3510
;
doi:10.1073/pnas.052592699
Abstract
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Biological Sciences - Biochemistry
:
Tip W. Loo
and
David M. Clarke
Vanadate trapping of nucleotide at the ATP-binding sites of human multidrug resistance P-glycoprotein exposes different residues to the drug-binding site
PNAS
2002
99
:
3511
-
3516
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.022049799
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Biological Sciences - Biochemistry
:
G. Sebastiaan Winkler
,
Arnold Kristjuhan
,
Hediye Erdjument-Bromage
,
Paul Tempst
,
and
Jesper Q. Svejstrup
Elongator is a histone H3 and H4 acetyltransferase important for normal histone acetylation levels in vivo
PNAS
2002
99
:
3517
-
3522
;
doi:10.1073/pnas.022042899
Abstract
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Biological Sciences - Biochemistry
:
Tapas K. Hazra
,
Tadahide Izumi
,
Istvan Boldogh
,
Barry Imhoff
,
Yoke W. Kow
,
Pawel Jaruga
,
Miral Dizdaroglu
,
and
Sankar Mitra
From the Cover: Identification and characterization of a human DNA glycosylase for repair of modified bases in oxidatively damaged DNA
PNAS
2002
99
:
3523
-
3528
;
doi:10.1073/pnas.062053799
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Biological Sciences - Biochemistry
:
Éva Bálint
,
Andrew C. Phillips
,
Serguei Kozlov
,
Colin L. Stewart
,
and
Karen H. Vousden
Induction of p57 KIP2 expression by p73β
PNAS
2002
99
:
3529
-
3534
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.062491899
Abstract
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Biophysics
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Biological Sciences - Biophysics
:
Dmitrii E. Makarov
,
Craig A. Keller
,
Kevin W. Plaxco
,
and
Horia Metiu
How the folding rate constant of simple, single-domain proteins depends on the number of native contacts
PNAS
2002
99
:
3535
-
3539
;
doi:10.1073/pnas.052713599
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Biological Sciences - Biophysics
:
A. J. Rader
,
Brandon M. Hespenheide
,
Leslie A. Kuhn
,
and
M. F. Thorpe
Protein unfolding: Rigidity lost
PNAS
2002
99
:
3540
-
3545
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.062492699
Abstract
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Supporting Information
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Physical Sciences - Engineering - Biological Sciences - Biophysics
:
Song Li
,
Peter Butler
,
Yingxiao Wang
,
Yingli Hu
,
Dong Cho Han
,
Shunichi Usami
,
Jun-Lin Guan
,
and
Shu Chien
The role of the dynamics of focal adhesion kinase in the mechanotaxis of endothelial cells
PNAS
2002
99
:
3546
-
3551
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052018099
Abstract
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Supporting Movies
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Biological Sciences - Biophysics
:
Igor Goychuk
and
Peter Hänggi
Ion channel gating: A first-passage time analysis of the Kramers type
PNAS
2002
99
:
3552
-
3556
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052015699
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Biological Sciences - Biophysics
:
Jan Köhler
,
Gerhard Winkler
,
Imke Schulte
,
Tim Scholz
,
William McKenna
,
Bernhard Brenner
,
and
Theresia Kraft
Mutation of the myosin converter domain alters cross-bridge elasticity
PNAS
2002
99
:
3557
-
3562
;
doi:10.1073/pnas.062415899
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Biological Sciences - Biophysics
:
Holger Wille
,
Melissa D. Michelitsch
,
Vincent Guénebaut
,
Surachai Supattapone
,
Ana Serban
,
Fred E. Cohen
,
David A. Agard
,
and
Stanley B. Prusiner
Structural studies of the scrapie prion protein by electron crystallography
PNAS
2002
99
:
3563
-
3568
;
published ahead of print
March 19, 2002
,
doi:10.1073/pnas.052703499
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Biological Sciences - Biophysics
:
Huan-Xiang Zhou
A Gaussian-chain model for treating residual charge–charge interactions in the unfolded state of proteins
PNAS
2002
99
:
3569
-
3574
;
published ahead of print
March 12, 2002
,
doi:10.1073/pnas.052030599
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Biological Sciences - Biophysics
:
Ioan Kosztin
,
Robijn Bruinsma
,
Paul O'Lague
,
and
Klaus Schulten
Mechanical force generation by G proteins
PNAS
2002
99
:
3575
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3580
;
doi:10.1073/pnas.052209199
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Biological Sciences - Biophysics
:
Chao Zhang
,
Jingtong Hou
,
and
Sung-Hou Kim
Fold prediction of helical proteins using torsion angle dynamics and predicted restraints
PNAS
2002
99
:
3581
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3585
;
doi:10.1073/pnas.052003799
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Cell Biology