PNAS — Table of Contents — March 5, 2002, 99 (5)

March 5, 2002; 99 (5)

FROM THE COVER

Commentaries

Commentary:
- Bennett Van Houten,
- Jonathan A. Eisen,
- and Philip C. Hanawalt
A cut above: Discovery of an alternative excision repair pathway in bacteria
PNAS 2002 99:2581-2583; doi:10.1073/pnas.062062599
- See companion article on page 1467 in issue 3 of volume 99
Commentary:
- Thomas Spies
Induction of T cell alertness by bacterial colonization of intestinal epithelium
PNAS 2002 99:2584-2586; doi:10.1073/pnas.062058399
- See companion article on page 2977 in issue 5 of volume 99

Physical Sciences

Applied Physical Sciences

Select this article
Physical Sciences - Applied Physical Sciences:
- E. George,
- J. Glimm,
- X.-L. Li,
- A. Marchese,
- and Z.-L. Xu
A comparison of experimental, theoretical, and numerical simulation Rayleigh–Taylor mixing rates
PNAS 2002 99:2587-2592; published ahead of print February 19, 2002, doi:10.1073/pnas.032568799

Chemistry

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Physical Sciences - Chemistry:
- Jian Chen,
- Steffi Körner,
- Stephen L. Craig,
- Shirley Lin,
- Dmitry M. Rudkevich,
- and Julius Rebek, Jr.
Chemical amplification with encapsulated reagents
PNAS 2002 99:2593-2596; doi:10.1073/pnas.052706499
Select this article
Physical Sciences - Chemistry:
- Irina A. Shkel,
- Oleg V. Tsodikov,
- and M. Thomas Record, Jr.
Asymptotic solution of the cylindrical nonlinear Poisson–Boltzmann equation at low salt concentration: Analytic expressions for surface potential and preferential interaction coefficient
PNAS 2002 99:2597-2602; doi:10.1073/pnas.032480699

Engineering

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Physical Sciences - Engineering - Biological Sciences - Medical Sciences:
- Wei Huang,
- Yuh-Pyng Sher,
- Konan Peck,
- and Yuan Cheng B. Fung
Matching gene activity with physiological functions
PNAS 2002 99:2603-2608; doi:10.1073/pnas.042684399

Geophysics

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Physical Sciences - Geophysics:
- A. Tabazadeh,
- K. Drdla,
- M. R. Schoeberl,
- P. Hamill,
- and O. B. Toon
From the Cover: Arctic “ozone hole” in a cold volcanic stratosphere
PNAS 2002 99:2609-2612; published ahead of print February 19, 2002, doi:10.1073/pnas.052518199

Mathematics

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Physical Sciences - Mathematics - Biological Sciences - Microbiology:
- G. F. Webb
- and M. J. Blaser
Dynamics of bacterial phenotype selection in a colonized host
PNAS 2002 99:3135-3140; published ahead of print February 26, 2002, doi:10.1073/pnas.042685799

Social Sciences

Economic Sciences

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Social Sciences - Economic Sciences:
- Barnaby Marsh
- and Alex Kacelnik
Framing effects and risky decisions in starlings
PNAS 2002 99:3352-3355; published ahead of print February 26, 2002, doi:10.1073/pnas.042491999

Biological Sciences

Applied Biological Sciences

Select this article
Biological Sciences - Applied Biological Sciences:
- Yanhong Shi,
- Michelle Hon,
- and Ronald M. Evans
The peroxisome proliferator-activated receptor δ, an integrator of transcriptional repression and nuclear receptor signaling
PNAS 2002 99:2613-2618; published ahead of print February 26, 2002, doi:10.1073/pnas.052707099

Cell Biology

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Biological Sciences - Cell Biology:
- Sean R. Cutler
- and David W. Ehrhardt
Polarized cytokinesis in vacuolate cells of Arabidopsis
PNAS 2002 99:2812-2817; doi:10.1073/pnas.052712299
Select this article
Biological Sciences - Cell Biology:
- Alla Y. Karpova,
- Maren Trost,
- John M. Murray,
- Lewis C. Cantley,
- and Peter M. Howley
Interferon regulatory factor-3 is an in vivo target of DNA-PK
PNAS 2002 99:2818-2823; published ahead of print February 26, 2002,

Table of Contents

FROM THE COVER

A cut above: Discovery of an alternative excision repair pathway in bacteria

Induction of T cell alertness by bacterial colonization of intestinal epithelium

A comparison of experimental, theoretical, and numerical simulation Rayleigh–Taylor mixing rates

Chemical amplification with encapsulated reagents

Asymptotic solution of the cylindrical nonlinear Poisson–Boltzmann equation at low salt concentration: Analytic expressions for surface potential and preferential interaction coefficient

Matching gene activity with physiological functions

From the Cover: Arctic “ozone hole” in a cold volcanic stratosphere

Dynamics of bacterial phenotype selection in a colonized host

Framing effects and risky decisions in starlings

The peroxisome proliferator-activated receptor δ, an integrator of transcriptional repression and nuclear receptor signaling

The role of n-3 polyunsaturated fatty acids in brain: Modulation of rat brain gene expression by dietary n-3 fatty acids

Cybr, a cytokine-inducible protein that binds cytohesin-1 and regulates its activity

tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase

Mechanism for antibody catalysis of the oxidation of water by singlet dioxygen

The TRAP/Mediator coactivator complex interacts directly with estrogen receptors α and β through the TRAP220 subunit and directly enhances estrogen receptor function in vitro

A cofactor approach to copper-dependent catalytic antibodies

Proteome-scale purification of human proteins from bacteria

Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd 3+

Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms

Cell senescence and telomere shortening induced by a new series of specific G-quadruplex DNA ligands

Transfer RNA-dependent amino acid biosynthesis: An essential route to asparagine formation

Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P

Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis

Microcin E492, a channel-forming bacteriocin from Klebsiella pneumoniae , induces apoptosis in some human cell lines

Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily

13 C NMR isotopomer analysis reveals a connection between pyruvate cycling and glucose-stimulated insulin secretion (GSIS)

Interaction with glycosaminoglycans is required for cyclophilin B to trigger integrin-mediated adhesion of peripheral blood T lymphocytes to extracellular matrix

Activity-dependent isolation of the presenilin– γ-secretase complex reveals nicastrin and a γ substrate

Nucleotides and phospholipids compete for binding to the C terminus of K ATP channels

Analysis of the AAA sensor-2 motif in the C-terminal ATPase domain of Hsp104 with a site-specific fluorescent probe of nucleotide binding

Conserved tryptophan in the core domain of transglutaminase is essential for catalytic activity

Structural basis for the guanine nucleotide-binding activity of tissue transglutaminase and its regulation of transamidation activity

High-quality life extension by the enzyme peptide methionine sulfoxide reductase

Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation

Rationally designed mutations convert de novo amyloid-like fibrils into monomeric β-sheet proteins

Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli

Two-photon excitation microscopy of tryptophan-containing proteins

Proton shuttle in green fluorescent protein studied by dynamic simulations

α-Helical stabilization by side chain shielding of backbone hydrogen bonds

Helix formation via conformation diffusion search

Network of coupled promoting motions in enzyme catalysis

From the Cover: Crystal structure of the yeast cytochrome bc 1 complex with its bound substrate cytochrome c

Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing

Polarized cytokinesis in vacuolate cells of Arabidopsis

Interferon regulatory factor-3 is an in vivo target of DNA-PK