PNAS — Table of Contents — January 22, 2002, 99 (2)

January 22, 2002; 99 (2)

FROM THE COVER

Commentaries

Commentary:
- Ajit Varki
Six blind men and the elephant—the many faces of heparan sulfate
PNAS 2002 99:543-545; doi:10.1073/pnas.022649499
- See companion article on page 568 in issue 2 of volume 99
Commentary:
- Alan M. Michelson
Deciphering genetic regulatory codes: A challenge for functional genomics
PNAS 2002 99:546-548; doi:10.1073/pnas.032685999
- See companion article on page 757 in issue 2 of volume 99
- See companion article on page 763 in issue 2 of volume 99
Commentary:
- R. G. Hill
Substance P, opioid, and catecholamine systems in the mouse central nervous system (CNS)
PNAS 2002 99:549-551; doi:10.1073/pnas.032663599
- See companion article on page 1029 in issue 2 of volume 99
Commentary:
- Jack R. Lancaster, Jr.
Reaping of nitric oxide by sickle cell disease
PNAS 2002 99:552-553; doi:10.1073/pnas.032633399
- See companion article on page 15215 in issue 26 of volume 98
Commentary:
- Robert T. Paine
- and Daniel E. Schindler
Ecological pork: Novel resources and the trophic reorganization of an ecosystem
PNAS 2002 99:554-555; doi:10.1073/pnas.032685599
- See companion article on page 791 in issue 2 of volume 99
Commentary:
- Richard E. Lenski
- and Margaret A. Riley
Chemical warfare from an ecological perspective
PNAS 2002 99:556-558; doi:10.1073/pnas.022641999
- See companion article on page 786 in issue 2 of volume 99

Physical Sciences

Chemistry

Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics:
- Meir Glick,
- Anwar Rayan,
- and Amiram Goldblum
A stochastic algorithm for global optimization and for best populations: A test case of side chains in proteins
PNAS 2002 99:703-708; published ahead of print January 15, 2002, doi:10.1073/pnas.022418199

Geophysics

Select this article
Physical Sciences - Geophysics:
- Anne M. Hofmeister
- and Ho-kwang Mao
Redefinition of the mode Grüneisen parameter for polyatomic substances and thermodynamic implications
PNAS 2002 99:559-564; doi:10.1073/pnas.241631698

Mathematics

Select this article
Physical Sciences - Mathematics:
- Liming Ge
- and Junhao Shen
Generator problem for certain property T factors
PNAS 2002 99:565-567; published ahead of print January 15, 2002, doi:10.1073/pnas.022593699

Biological Sciences

Applied Biological Sciences

Select this article
Biological Sciences - Applied Biological Sciences:
- Dongfang Liu,
- Zachary Shriver,
- Ganesh Venkataraman,
- Yosuf El Shabrawi,
- and Ram Sasisekharan
Tumor cell surface heparan sulfate as cryptic promoters or inhibitors of tumor growth and metastasis
PNAS 2002 99:568-573; doi:10.1073/pnas.012578299
- See commentary article on page 543 in issue 2 of volume 99
Select this article
Biological Sciences - Applied Biological Sciences:
- Brian M. Paegel,
- Charles A. Emrich,
- Gary J. Wedemayer,
- James R. Scherer,
- and Richard A. Mathies
High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor
PNAS 2002 99:574-579; published ahead of print January 15, 2002, doi:10.1073/pnas.012608699

Biophysics

Select this article
Biological Sciences - Biophysics:
- Alex Kentsis,
- Ronald E. Gordon,
- and Katherine L. B. Borden
From the Cover: Self-assembly properties of a model RING domain
PNAS 2002 99:667-672; published ahead of print January 15, 2002, doi:10.1073/pnas.012317299
Select this article
Biological Sciences - Biophysics:
- Didier Gonze,
- José Halloy,
- and Albert Goldbeter
Robustness of circadian rhythms with respect to molecular noise
PNAS 2002 99:673-678; published ahead of print January 15, 2002, doi:10.1073/pnas.022628299
Select this article
Biological Sciences - Biophysics:
- David McMillen,
- Nancy Kopell,
- Jeff Hasty,
- and J. J. Collins
Synchronizing genetic relaxation oscillators by intercell signaling
PNAS 2002 99:679-684; doi:10.1073/pnas.022642299
Select this article
Biological Sciences - Biophysics:
- Margaret S. Cheung,
- Angel E. García,
- and José N. Onuchic
Protein folding mediated by solvation: Water expulsion and formation of the hydrophobic core occur after the structural collapse
PNAS 2002 99:685-690; doi:10.1073/pnas.022387699
Select this article
Biological Sciences - Biophysics:
- Patrice Koehl
- and Michael Levitt
Improved recognition of native-like protein structures using a family of designed sequences
PNAS 2002 99:691-696; published ahead of print January 8, 2002, doi:10.1073/pnas.022408799
Select this article
Biological Sciences - Biophysics:
- Yang Qu
- and Gerhard Dahl
Function of the voltage gate of gap junction channels: Selective exclusion of molecules
PNAS 2002 99:697-702; doi:10.1073/pnas.022324499
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics:
- Meir Glick,
- Anwar Rayan,
- and Amiram Goldblum
A stochastic algorithm for global optimization and for best populations: A test case of side chains in proteins
PNAS 2002 99:703-708; published ahead of print January 15, 2002, doi:10.1073/pnas.022418199
Select this article
Biological Sciences - Biophysics:
- James G. Bann,
- Jerome Pinkner,
- Scott J. Hultgren,
- and Carl Frieden
Real-time and equilibrium 19 F-NMR studies reveal the role of domain–domain interactions in the folding of the chaperone PapD
PNAS 2002 99:709-714; published ahead of print January 15, 2002, doi:10.1073/pnas.022649599

Cell Biology

Select this article
Biological Sciences - Cell Biology:
- Jack L. Arbiser,
- John Petros,
- Robert Klafter,
- Baskaran Govindajaran,
- Elizabeth R. McLaughlin,
- Lawrence F. Brown,
- Cynthia Cohen,
- Marsha Moses,
- Susan Kilroy,
- Rebecca S. Arnold,
- and J. David Lambeth
Reactive oxygen generated by Nox1 triggers the angiogenic switch
PNAS 2002 99:715-720; doi:10.1073/pnas.022630199
Select this article
Biological Sciences - Cell Biology:
- Kiyoshi Suzuma,
- Noriko Takahara,
- Izumi Suzuma,
- Keiji Isshiki,
- Kohjiro Ueki,
- Michael Leitges,
- Lloyd Paul Aiello,
- and George L. King
Characterization of protein kinase C β isoform's action on retinoblastoma protein phosphorylation, vascular endothelial growth factor-induced endothelial cell proliferation, and retinal neovascularization
PNAS 2002 99:721-726; doi:10.1073/pnas.022644499
Select this article
Biological Sciences - Cell Biology:
- Paul J. Muchowski,
- Ke Ning,
- Crislyn D'Souza-Schorey,
- and Stanley Fields
Requirement of an intact microtubule cytoskeleton for aggregation and inclusion body formation by a mutant huntingtin fragment
PNAS 2002 99:727-732; published ahead of print January 15, 2002, doi:10.1073/pnas.022628699
Select this article
Biological Sciences - Cell Biology:
- Huaiyang Chen,
- Ian C. Duncan,
- Hormozd Bozorgchami,
- and Su Hao Lo
Tensin1 and a previously undocumented family member, tensin2, positively regulate cell migration
PNAS 2002 99:733-738; published ahead of print January 15, 2002, doi:10.1073/pnas.022518699
Select this article
Biological Sciences - Cell Biology:
- Joan D. Ferraris,
- Chester K. Williams,
- Prita Persaud,
- Zheng Zhang,
- Ye Chen,
- and Maurice B. Burg
Activity of the TonEBP/OREBP transactivation domain varies directly with extracellular NaCl concentration
PNAS 2002 99:739-744; published ahead of print January 15, 2002, doi:10.1073/pnas.241637298
Select this article
Biological Sciences - Cell Biology:
- Minoru Funakoshi,
- Toru Sasaki,
- Takeharu Nishimoto,
- and Hideki Kobayashi
Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome
PNAS 2002 99:745-750; doi:10.1073/pnas.012585199
Select this article
Biological Sciences - Cell Biology:
- Hyeong-Cheol Yang
- and Liza A. Pon
Actin cable dynamics in budding yeast
PNAS 2002 99:751-756; doi:10.1073/pnas.022462899

Developmental Biology

Select this article
Biological Sciences - Developmental Biology - Biological Sciences - Genetics:
- Benjamin P. Berman,
- Yutaka Nibu,
- Barret D. Pfeiffer,
- Pavel Tomancak,
- Susan E. Celniker,
- Michael Levine,
- Gerald M. Rubin,
- and Michael B. Eisen
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
PNAS 2002 99:757-762; doi:10.1073/pnas.231608898
- See commentary article on page 546 in issue 2 of volume 99
Select this article
Biological Sciences - Developmental Biology:
- Michele Markstein,
- Peter Markstein,
- Vicky Markstein,
- and Michael S. Levine
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo
PNAS 2002 99:763-768; published ahead of print December 18, 2001, doi:10.1073/pnas.012591199
- See commentary article on page 546 in issue 2 of volume 99
Select this article
Biological Sciences - Developmental Biology:
- Mavji N. Patel,
- Christopher G. Knight,
- Constantina Karageorgi,
- and Armand M. Leroi
Evolution of germ-line signals that regulate growth and aging in nematodes
PNAS 2002 99:769-774; doi:10.1073/pnas.012511099
Select this article
Biological Sciences - Developmental Biology:
- Caroline Goutte,
- Makoto Tsunozaki,
- Valerie A. Hale,
- and James R. Priess
APH-1 is a multipass membrane protein essential for the Notch signaling pathway in Caenorhabditis elegans embryos
PNAS 2002 99:775-779; published ahead of print January 15, 2002, doi:10.1073/pnas.022523499
Select this article
Biological Sciences - Developmental Biology:
- Kenta Sumiyama,
- Steven Q. Irvine,
- David W. Stock,
- Kenneth M. Weiss,
- Kazuhiko Kawasaki,
- Nobuyoshi Shimizu,
- Cooduvalli S. Shashikant,
- Webb Miller,
- and Frank H. Ruddle
Genomic structure and functional control of the Dlx3 - 7 bigene cluster
PNAS 2002 99:780-785; published ahead of print January 15, 2002, doi:10.1073/pnas.012584999

Ecology

Select this article
Biological Sciences - Ecology:
- Tamás L. Czárán,
- Rolf F. Hoekstra,
- and Ludo Pagie
Chemical warfare between microbes promotes biodiversity
PNAS 2002 99:786-790; published ahead of print January 15, 2002,

Table of Contents

FROM THE COVER

Six blind men and the elephant—the many faces of heparan sulfate

Deciphering genetic regulatory codes: A challenge for functional genomics

Substance P, opioid, and catecholamine systems in the mouse central nervous system (CNS)

Reaping of nitric oxide by sickle cell disease

Ecological pork: Novel resources and the trophic reorganization of an ecosystem

Chemical warfare from an ecological perspective

A stochastic algorithm for global optimization and for best populations: A test case of side chains in proteins

Redefinition of the mode Grüneisen parameter for polyatomic substances and thermodynamic implications

Generator problem for certain property T factors

Tumor cell surface heparan sulfate as cryptic promoters or inhibitors of tumor growth and metastasis

High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor

Abietadiene synthase catalysis: Mutational analysis of a prenyl diphosphate ionization-initiated cyclization and rearrangement

Blocking site-to-site translocation of a misactivated amino acid by mutation of a class I tRNA synthetase

From the Cover: Snapshot of a key intermediate in enzymatic thiamin catalysis: Crystal structure of the α-carbanion of (α,β-dihydroxyethyl)-thiamin diphosphate in the active site of transketolase from Saccharomyces cerevisiae

Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation

Multiple hematopoietic defects and delayed globin switching in Ikaros null mice

Protein and ligand dynamics in 4-hydroxybenzoate hydroxylase

Combinatorial approaches: A new tool to search for highly structured β-hairpin peptides

Gene characterized for membrane desaturase that produces ( E )-11 isomers of mono- and diunsaturated fatty acids

A mutation in the peroxisome proliferator-activated receptor γ-binding site in the gene for the cytosolic form of phosphoenolpyruvate carboxykinase reduces adipose tissue size and fat content in mice

Herpes simplex virus 1-infected cell protein 0 contains two E3 ubiquitin ligase sites specific for different E2 ubiquitin-conjugating enzymes

mda-5 : An interferon-inducible putative RNA helicase with double-stranded RNA-dependent ATPase activity and melanoma growth-suppressive properties

Activation and inhibition of G protein-coupled receptors by cell-penetrating membrane-tethered peptides

Transcription-coupled repair in RNA polymerase I-transcribed genes of yeast

tRNA elements mediate the assembly of an icosahedral RNA virus

Supervillin associates with androgen receptor and modulates its transcriptional activity

From the Cover: Self-assembly properties of a model RING domain

Robustness of circadian rhythms with respect to molecular noise

Synchronizing genetic relaxation oscillators by intercell signaling

Protein folding mediated by solvation: Water expulsion and formation of the hydrophobic core occur after the structural collapse

Improved recognition of native-like protein structures using a family of designed sequences

Function of the voltage gate of gap junction channels: Selective exclusion of molecules

A stochastic algorithm for global optimization and for best populations: A test case of side chains in proteins

Real-time and equilibrium 19 F-NMR studies reveal the role of domain–domain interactions in the folding of the chaperone PapD

Reactive oxygen generated by Nox1 triggers the angiogenic switch

Characterization of protein kinase C β isoform's action on retinoblastoma protein phosphorylation, vascular endothelial growth factor-induced endothelial cell proliferation, and retinal neovascularization

Requirement of an intact microtubule cytoskeleton for aggregation and inclusion body formation by a mutant huntingtin fragment

Tensin1 and a previously undocumented family member, tensin2, positively regulate cell migration

Activity of the TonEBP/OREBP transactivation domain varies directly with extracellular NaCl concentration

Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome

Actin cable dynamics in budding yeast

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

Evolution of germ-line signals that regulate growth and aging in nematodes

APH-1 is a multipass membrane protein essential for the Notch signaling pathway in Caenorhabditis elegans embryos

Genomic structure and functional control of the Dlx3 - 7 bigene cluster

Chemical warfare between microbes promotes biodiversity