PNAS — Table of Contents — May 28, 2002, 99 (11)

Commentaries

Commentary:
- Ashley I. Bush
- and Rudolph E. Tanzi
The galvanization of β-amyloid in Alzheimer's disease
PNAS 2002 99:7317-7319; doi:10.1073/pnas.122249699
- See companion article on page 7705 in issue 11 of volume 99
Commentary:
- Martin D. Bootman,
- Michael J. Berridge,
- and H. Llewelyn Roderick
Activating calcium release through inositol 1,4,5-trisphosphate receptors without inositol 1,4,5-trisphosphate
PNAS 2002 99:7320-7322; doi:10.1073/pnas.132254299
- See companion article on page 7711 in issue 11 of volume 99

Physical Sciences

Applied Mathematics

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Physical Sciences - Applied Mathematics - Biological Sciences - Genetics:
- Erik van Nimwegen,
- Mihaela Zavolan,
- Nikolaus Rajewsky,
- and Eric D. Siggia
Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics
PNAS 2002 99:7323-7328; published ahead of print May 21, 2002, doi:10.1073/pnas.112690399
Select this article
Physical Sciences - Applied Mathematics:
- S. Fomel
- and J. A. Sethian
Fast-phase space computation of multiple arrivals
PNAS 2002 99:7329-7334; doi:10.1073/pnas.102476599
Select this article
Physical Sciences - Applied Mathematics:
- Kui Zhang,
- Minghua Deng,
- Ting Chen,
- Michael S. Waterman,
- and Fengzhu Sun
A dynamic programming algorithm for haplotype block partitioning
PNAS 2002 99:7335-7339; published ahead of print May 21, 2002, doi:10.1073/pnas.102186799

Chemistry

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Physical Sciences - Chemistry:
- Vladimir Shafirovich
- and Sergei V. Lymar
Nitroxyl and its anion in aqueous solutions: Spin states, protic equilibria, and reactivities toward oxygen and nitric oxide
PNAS 2002 99:7340-7345; published ahead of print May 21, 2002, doi:10.1073/pnas.112202099

Engineering

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Physical Sciences - Engineering:
- David N. Levin
Sensor-independent stimulus representations
PNAS 2002 99:7346-7351; published ahead of print May 21, 2002, doi:10.1073/pnas.102170499

Geophysics

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Physical Sciences - Geophysics:
- S. Uyeda,
- M. Hayakawa,
- T. Nagao,
- O. Molchanov,
- K. Hattori,
- Y. Orihara,
- K. Gotoh,
- Y. Akinaga,
- and H. Tanaka
Electric and magnetic phenomena observed before the volcano-seismic activity in 2000 in the Izu Island Region, Japan
PNAS 2002 99:7352-7355; published ahead of print May 21, 2002, doi:10.1073/pnas.072208499

Mathematics

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Physical Sciences - Mathematics:
- Victor Kaftal
- and Gary Weiss
Traces, ideals, and arithmetic means
PNAS 2002 99:7356-7360; published ahead of print May 21, 2002, doi:10.1073/pnas.112074699
Select this article
Physical Sciences - Mathematics:
- Yevsey A. Nisnevich
The structure of a class of finite ramified coverings and canonical forms of analytic matrix-functions in a neighborhood of a ramified turning point
PNAS 2002 99:7361-7366; published ahead of print May 21, 2002, doi:10.1073/pnas.082074899

Biological Sciences

Biophysics

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Biological Sciences - Biophysics:
- Rustem I. Litvinov,
- Henry Shuman,
- Joel S. Bennett,
- and John W. Weisel
Binding strength and activation state of single fibrinogen-integrin pairs on living cells
PNAS 2002 99:7426-7431; published ahead of print May 14, 2002, doi:10.1073/pnas.112194999
Select this article
Biological Sciences - Biophysics:
- Zhexin Xiang,
- Cinque S. Soto,
- and Barry Honig
Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction
PNAS 2002 99:7432-7437; published ahead of print May 14, 2002, doi:10.1073/pnas.102179699

Cell Biology

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Biological Sciences - Cell Biology:
- J. Robert Manak,
- Nesanet Mitiku,
- and Joseph S. Lipsick
Mutation of the Drosophila homologue of the Myb protooncogene causes genomic instability
PNAS 2002 99:7438-7443; doi:10.1073/pnas.122231599
Select this article
Biological Sciences - Cell Biology:
- Kimmo Porkka,
- Pirjo Laakkonen,
- Jason A. Hoffman,
- Michele Bernasconi,
- and Erkki Ruoslahti
A fragment of the HMGN2 protein homes to the nuclei of tumor cells and tumor endothelial cells in vivo
PNAS 2002 99:7444-7449; published ahead of print May 21, 2002, doi:10.1073/pnas.062189599
Select this article
Biological Sciences - Cell Biology:
- John Hanna,
- Kate Carroll,
- and Suzanne R. Pfeffer
Identification of residues in TIP47 essential for Rab9 binding
PNAS 2002 99:7450-7454; published ahead of print May 21, 2002, doi:10.1073/pnas.112198799
Select this article
Biological Sciences - Cell Biology:
- Matthew R. Ritter,
- Michael I. Dorrell,
- Joseph Edmonds,
- Sheila Fallon Friedlander,
- and Martin Friedlander
From the Cover: Insulin-like growth factor 2 and potential regulators of hemangioma growth and involution identified by large-scale expression analysis
PNAS 2002 99:7455-7460; doi:10.1073/pnas.102185799
Select this article
Biological Sciences - Cell Biology:
- Thomas Hofmann,
- Michael Schaefer,
- Günter Schultz,
- and Thomas Gudermann
Subunit composition of mammalian transient receptor potential channels in living cells
PNAS 2002 99:7461-7466; published ahead of print May 14, 2002, doi:10.1073/pnas.102596199
Select this article
Biological Sciences - Cell Biology:
- Danuta Balicki,
- Christopher D. Putnam,
- Puthupparampil V. Scaria,
- and Ernest Beutler
Structure and function correlation in histone H2A peptide-mediated gene transfer
PNAS 2002 99:7467-7471; doi:10.1073/pnas.102168299
Select this article
Biological Sciences - Cell Biology:
- Maria A. Marchetti,
- Sanjay Kumar,
- Edgar Hartsuiker,
- Mohamed Maftahi,
- Antony M. Carr,
- Greg A. Freyer,
- William C. Burhans,
- and Joel A. Huberman
A single unbranched S-phase DNA damage and replication fork blockage checkpoint pathway
PNAS 2002 99:7472-7477; published ahead of print May 21, 2002, doi:10.1073/pnas.112702399
Select this article
Biological Sciences - Cell Biology:
- Alan M. Fong,
- Richard T. Premont,
- Ricardo M. Richardson,
- Yen-Rei A. Yu,
- Robert J. Lefkowitz,
- and Dhavalkumar D. Patel
Defective lymphocyte chemotaxis in β-arrestin2- and GRK6-deficient mice
PNAS 2002 99:7478-7483; published ahead of print May 14, 2002, doi:10.1073/pnas.112198299
Select this article
Biological Sciences - Cell Biology:
- Salvatore Alesci,
- Walter J. Ramsey,
- Stefan R. Bornstein,
- George P. Chrousos,
- Peter J. Hornsby,
- Salvatore Benvenga,
- Francesco Trimarchi,
- and Monika Ehrhart-Bornstein
Adenoviral vectors can impair adrenocortical steroidogenesis: Clinical implications for natural infections and gene therapy
PNAS 2002 99:7484-7489; published ahead of print May 21, 2002, doi:10.1073/pnas.062170099

Developmental Biology

Select this article
Biological Sciences - Developmental Biology:
- Dale Frank,
- Weiwei Fortino,
- Lorraine Clark,
- Raymond Musalo,
- Wenxian Wang,
- Anjana Saxena,
- Chi-Ming Li,
- Wolf Reik,
- Thomas Ludwig,
- and Benjamin Tycko
Placental overgrowth in mice lacking the imprinted gene Ipl
PNAS 2002 99:7490-7495; published ahead of print May 21, 2002, doi:10.1073/pnas.122039999
Select this article
Biological Sciences - Developmental Biology:
- Angelique W. Whitehurst,
- Julie L. Wilsbacher,
- Youngjai You,
- Kate Luby-Phelps,
- Mary Shannon Moore,
- and Melanie H. Cobb
ERK2 enters the nucleus by a carrier-independent mechanism
PNAS 2002 99:7496-7501; published ahead of print May 21, 2002, doi:10.1073/pnas.112495999
Select this article
Biological Sciences - Developmental Biology:
- Jaime Resino,
- Patricia Salama-Cohen,
- and Antonio García-Bellido
Determining the role of patterned cell proliferation in the shape and size of the Drosophila wing
PNAS 2002 99:7502-7507; published ahead of print May 14, 2002, doi:10.1073/pnas.072208199

Evolution

Select this article
Biological Sciences - Evolution:
- James B. Whitfield
Estimating the age of the polydnavirus/braconid wasp symbiosis
PNAS 2002 99:7508-7513; published ahead of print May 21, 2002, doi:10.1073/pnas.112067199
Select this article
Biological Sciences - Evolution:
- Tomoaki Matsuura,
- Muneyoshi Yamaguchi,
- Elizabeth P. Ko-Mitamura,
- Yasufumi Shima,
- Itaru Urabe,
- and Tetsuya Yomo
Importance of compartment formation for a self-encoding system
PNAS 2002 99:7514-7517; published ahead of print May 21, 2002, doi:10.1073/pnas.062710399

Genetics

Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Genetics:
- Erik van Nimwegen,
- Mihaela Zavolan,
- Nikolaus Rajewsky,
- and Eric D. Siggia
Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics
PNAS 2002 99:7323-7328; published ahead of print May 21, 2002, doi:10.1073/pnas.112690399
Select this article
Biological Sciences - Genetics:
- Tom Walsh,
- Vanessa Walsh,
- Sarah Vreugde,
- Ronna Hertzano,
- Hashem Shahin,
- Smadar Haika,
- Ming K. Lee,
- Moien Kanaan,
- Mary-Claire King,
- and Karen B. Avraham
From flies' eyes to our ears: Mutations in a human class III myosin cause progressive nonsyndromic hearing loss DFNB30
PNAS 2002 99:7518-7523; doi:10.1073/pnas.102091699
Select this article
Biological Sciences - Genetics:
- Masahito Ikawa,
- Vinay Tergaonkar,
- Atsuo Ogura,
- Narumi Ogonuki,
- Kimiko Inoue,
- and Inder M. Verma
Restoration of spermatogenesis by lentiviral gene transfer: Offspring from infertile mice
PNAS 2002 99:7524-7529; doi:10.1073/pnas.072207299
Select this article
Biological Sciences - Genetics:
- Utako Yamanouchi,
- Masahiro Yano,
- Hongxuan Lin,
- Motoyuki Ashikari,
- and Kyoji Yamada
A rice spotted leaf gene, Spl7 , encodes a heat stress transcription factor protein
PNAS 2002 99:7530-7535; published ahead of print May 14, 2002, doi:10.1073/pnas.112209199
Select this article
Biological Sciences - Genetics:
- Thean-Hock Tang,
- Jean-Pierre Bachellerie,
- Timofey Rozhdestvensky,
- Marie-Line Bortolin,
- Harald Huber,
- Mario Drungowski,
- Thorsten Elge,
- Jürgen Brosius,
- and Alexander Hüttenhofer
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
PNAS 2002 99:7536-7541; doi:10.1073/pnas.112047299
Select this article
Biological Sciences - Genetics:
- Robert J. Klein,
- Ziva Misulovin,
- and Sean R. Eddy
Noncoding RNA genes identified in AT-rich hyperthermophiles
PNAS 2002 99:7542-7547; doi:10.1073/pnas.112063799
Select this article
Biological Sciences - Genetics:
- Laura A. Lettice,
- Taizo Horikoshi,
- Simon J. H. Heaney,
- Marijke J. van Baren,
- Herma C. van der Linde,
- Guido J. Breedveld,
- Marijke Joosse,
- Nurten Akarsu,
- Ben A. Oostra,
- Naoto Endo,
- Minoru Shibata,
- Mikio Suzuki,
- Eiichi Takahashi,
- Toshikatsu Shinka,
- Yutaka Nakahori,
- Dai Ayusawa,
- Kazuhiko Nakabayashi,
- Stephen W. Scherer,
- Peter Heutink,
- Robert E. Hill,
- and Sumihare Noji
Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly
PNAS 2002 99:7548-

Table of Contents

FROM THE COVER

The galvanization of β-amyloid in Alzheimer's disease

Activating calcium release through inositol 1,4,5-trisphosphate receptors without inositol 1,4,5-trisphosphate

Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics

Fast-phase space computation of multiple arrivals

A dynamic programming algorithm for haplotype block partitioning

Nitroxyl and its anion in aqueous solutions: Spin states, protic equilibria, and reactivities toward oxygen and nitric oxide

Sensor-independent stimulus representations

Electric and magnetic phenomena observed before the volcano-seismic activity in 2000 in the Izu Island Region, Japan

Traces, ideals, and arithmetic means

The structure of a class of finite ramified coverings and canonical forms of analytic matrix-functions in a neighborhood of a ramified turning point

15-Deoxy-Δ 12,14 -prostaglandin J 2 : The endogenous electrophile that induces neuronal apoptosis

Long-term and homogeneous regulation of the Escherichia coli araBAD promoter by use of a lactose transporter of relaxed specificity

The crystal structure of the C-terminal fragment of striated-muscle α-tropomyosin reveals a key troponin T recognition site

Complexation of peptidoglycan intermediates by the lipoglycodepsipeptide antibiotic ramoplanin: Minimal structural requirements for intermolecular complexation and fibril formation

Elucidation of the function of lipoprotein-sorting signals that determine membrane localization

Functional interactions of HslV (ClpQ) with the ATPase HslU (ClpY)

Amyloid aggregates of the HET-s prion protein are infectious

Vitamin E succinate inhibits the function of androgen receptor and the expression of prostate-specific antigen in prostate cancer cells

Structural insight into the complex formation of latent matrix metalloproteinase 2 with tissue inhibitor of metalloproteinase 2

A core–BRAF35 complex containing histone deacetylase mediates repression of neuronal-specific genes

Binding strength and activation state of single fibrinogen-integrin pairs on living cells

Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction

Mutation of the Drosophila homologue of the Myb protooncogene causes genomic instability

A fragment of the HMGN2 protein homes to the nuclei of tumor cells and tumor endothelial cells in vivo

Identification of residues in TIP47 essential for Rab9 binding

From the Cover: Insulin-like growth factor 2 and potential regulators of hemangioma growth and involution identified by large-scale expression analysis

Subunit composition of mammalian transient receptor potential channels in living cells

Structure and function correlation in histone H2A peptide-mediated gene transfer

A single unbranched S-phase DNA damage and replication fork blockage checkpoint pathway

Defective lymphocyte chemotaxis in β-arrestin2- and GRK6-deficient mice

Adenoviral vectors can impair adrenocortical steroidogenesis: Clinical implications for natural infections and gene therapy

Placental overgrowth in mice lacking the imprinted gene Ipl

ERK2 enters the nucleus by a carrier-independent mechanism

Determining the role of patterned cell proliferation in the shape and size of the Drosophila wing

Estimating the age of the polydnavirus/braconid wasp symbiosis

Importance of compartment formation for a self-encoding system

Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics

From flies' eyes to our ears: Mutations in a human class III myosin cause progressive nonsyndromic hearing loss DFNB30

Restoration of spermatogenesis by lentiviral gene transfer: Offspring from infertile mice

A rice spotted leaf gene, Spl7 , encodes a heat stress transcription factor protein

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus

Noncoding RNA genes identified in AT-rich hyperthermophiles

Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly