PNAS — Table of Contents — November 20, 2007, 104 (47)

This Week in PNAS

This Week in PNAS:
In This Issue
PNAS 2007 104:18345-18346; doi:10.1073/iti4707104

Commentaries

Commentary:
- George Hinkal
- and Lawrence A. Donehower
Decline and fall of the tumor suppressor
PNAS 2007 104:18347-18348; published ahead of print November 12, 2007, doi:10.1073/pnas.0709330104
- See companion article on page 16633 in issue 42 of volume 104
Commentary:
- Mordecai P. Blaustein,
- Thomas H. Charpentier,
- and David J. Weber
Getting a grip on calcium regulation
PNAS 2007 104:18349-18350; published ahead of print November 14, 2007, doi:10.1073/pnas.0709008104
- See companion article on page 18467 in issue 47 of volume 104
Commentary:
- Edward C. Holmes
When HIV spread afar
PNAS 2007 104:18351-18352; published ahead of print November 14, 2007, doi:10.1073/pnas.0709179104
- See companion article on page 18566 in issue 47 of volume 104
Commentary:
- David Schimel
Carbon cycle conundrums
PNAS 2007 104:18353-18354; published ahead of print November 12, 2007, doi:10.1073/pnas.0709331104
- See companion article on page 18866 in issue 47 of volume 104

Perspective

Select this article
Perspective:
- Monita Y. M. Pau,
- John D. Lipscomb,
- and Edward I. Solomon
Substrate activation for O 2 reactions by oxidized metal centers in biology
PNAS 2007 104:18355-18362; published ahead of print November 14, 2007, doi:10.1073/pnas.0704191104

Biological Science

Applied Biological Sciences

Select this article
Biological Science - Applied Biological Sciences:
- John S. Rudge,
- Jocelyn Holash,
- Donna Hylton,
- Michelle Russell,
- Shelly Jiang,
- Raymond Leidich,
- Nicholas Papadopoulos,
- Erica A. Pyles,
- Al Torri,
- Stanley J. Wiegand,
- Gavin Thurston,
- Neil Stahl,
- and George D. Yancopoulos
Inaugural Article: VEGF Trap complex formation measures production rates of VEGF, providing a biomarker for predicting efficacious angiogenic blockade
PNAS 2007 104:18363-18370; published ahead of print November 13, 2007, doi:10.1073/pnas.0708865104
Open Access Article

Physical Sciences

Applied Mathematics

Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Genetics:
- Larsson Omberg,
- Gene H. Golub,
- and Orly Alter
A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies
PNAS 2007 104:18371-18376; published ahead of print November 14, 2007, doi:10.1073/pnas.0709146104
Open Access Article
Select this article
Physical Sciences - Applied Mathematics:
- Silvia De Monte,
- Francesco d'Ovidio,
- Sune Danø,
- and Preben Graae Sørensen
Dynamical quorum sensing: Population density encoded in cellular dynamics
PNAS 2007 104:18377-18381; published ahead of print November 14, 2007, doi:10.1073/pnas.0706089104

Applied Physical Sciences

Select this article
Physical Sciences - Applied Physical Sciences:
- Graziano Vernizzi
- and Monica Olvera de la Cruz
Faceting ionic shells into icosahedra via electrostatics
PNAS 2007 104:18382-18386; published ahead of print November 14, 2007, doi:10.1073/pnas.0703431104
Select this article
Physical Sciences - Applied Physical Sciences:
- Francesco Mallamace,
- Caterina Branca,
- Matteo Broccio,
- Carmelo Corsaro,
- Chung-Yuan Mou,
- and Sow-Hsin Chen
The anomalous behavior of the density of water in the range 30 K < T < 373 K
PNAS 2007 104:18387-18391; published ahead of print November 13, 2007, doi:10.1073/pnas.0706504104
Select this article
Physical Sciences - Applied Physical Sciences:
- Shaffique Adam,
- E. H. Hwang,
- V. M. Galitski,
- and S. Das Sarma
A self-consistent theory for graphene transport
PNAS 2007 104:18392-18397; published ahead of print November 14, 2007, doi:10.1073/pnas.0704772104

Chemistry

Select this article
Physical Sciences - Chemistry - Biological Sciences - Genetics:
- Marcel O. Vlad,
- Alexandru Dan Corlan,
- Vlad T. Popa,
- and John Ross
On anti-portfolio effects in science and technology with application to reaction kinetics, chemical synthesis, and molecular biology
PNAS 2007 104:18398-18403; published ahead of print November 14, 2007, doi:10.1073/pnas.0708624104
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics:
- Luyuan Zhang,
- Lijuan Wang,
- Ya-Ting Kao,
- Weihong Qiu,
- Yi Yang,
- Oghaghare Okobiah,
- and Dongping Zhong
From the Cover: Mapping hydration dynamics around a protein surface
PNAS 2007 104:18461-18466; published ahead of print November 14, 2007, doi:10.1073/pnas.0707647104
Open Access Article

Geology

Select this article
Physical Sciences - Geology - Biological Sciences - Evolution:
- Gene Hunt
From the Cover: The relative importance of directional change, random walks, and stasis in the evolution of fossil lineages
PNAS 2007 104:18404-18408; published ahead of print November 14, 2007, doi:10.1073/pnas.0704088104

Physics

Select this article
Physical Sciences - Physics:
- Peter Baum
- and Ahmed H. Zewail
Attosecond electron pulses for 4D diffraction and microscopy
PNAS 2007 104:18409-18414; published ahead of print November 13, 2007, doi:10.1073/pnas.0709019104
Open Access Article
Select this article
Physical Sciences - Physics:
- Chuanwei Zhang,
- V. W. Scarola,
- Sumanta Tewari,
- and S. Das Sarma
Anyonic braiding in optical lattices
PNAS 2007 104:18415-18420; published ahead of print November 13, 2007, doi:10.1073/pnas.0709075104

Social Sciences

Economic Sciences

Select this article
Social Sciences - Economic Sciences:
- Kenneth J. Arrow,
- Alain Bensoussan,
- Qi Feng,
- and Suresh P. Sethi
Optimal savings and the value of population
PNAS 2007 104:18421-18426; published ahead of print November 5, 2007, doi:10.1073/pnas.0708030104

Biological Sciences

Agricultural Sciences

Select this article
Biological Sciences - Agricultural Sciences:
- Wenbin Li,
- Qijian Song,
- Ronald H. Brlansky,
- and John S. Hartung
Genetic diversity of citrus bacterial canker pathogens preserved in herbarium specimens
PNAS 2007 104:18427-18432; published ahead of print November 12, 2007, doi:10.1073/pnas.0705590104

Biochemistry

Select this article
Biological Sciences - Biochemistry:
- Adam W. Barb,
- Ling Jiang,
- Christian R. H. Raetz,
- and Pei Zhou
Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding
PNAS 2007 104:18433-18438; published ahead of print November 19, 2007, doi:10.1073/pnas.0709412104
Select this article
Biological Sciences - Biochemistry:
- SunHwa Hong,
- Young-Wook Cho,
- Li-Rong Yu,
- Hong Yu,
- Timothy D. Veenstra,
- and Kai Ge
Identification of JmjC domain-containing UTX and JMJD3 as histone H3 lysine 27 demethylases
PNAS 2007 104:18439-18444; published ahead of print November 14, 2007, doi:10.1073/pnas.0707292104
Select this article
Biological Sciences - Biochemistry:
- Laure Yatime,
- Yves Mechulam,
- Sylvain Blanquet,
- and Emmanuelle Schmitt
Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states
PNAS 2007 104:18445-18450; published ahead of print November 13, 2007, doi:10.1073/pnas.0706784104
Open Access Article
Select this article
Biological Sciences - Biochemistry:
- R. E. Alcantara,
- C. Xu,
- T. G. Spiro,
- and V. Guallar
A quantum-chemical picture of hemoglobin affinity
PNAS 2007 104:18451-18455; published ahead of print November 14, 2007, doi:10.1073/pnas.0706026104
Select this article
Biological Sciences - Biochemistry:
- Yasuko Noda,
- Barbara S. Berlett,
- Earl R. Stadtman,
- Angel Aponte,
- Meghan Morgan,
- and Rong-Fong Shen
Identification of enzymes and regulatory proteins in Escherichia coli that are oxidized under nitrogen, carbon, or phosphate starvation
PNAS 2007 104:18456-18460; published ahead of print November 14, 2007, doi:10.1073/pnas.0709368104

Biophysics

Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics:
- Luyuan Zhang,
- Lijuan Wang,
- Ya-Ting Kao,
- Weihong Qiu,
- Yi Yang,
- Oghaghare Okobiah,
- and Dongping Zhong
From the Cover: Mapping hydration dynamics around a protein surface
PNAS 2007 104:18461-18466; published ahead of print November 14, 2007, doi:10.1073/pnas.0707647104
Open Access Article
Select this article
Biological Sciences - Biophysics:
- Gabriel Mercado Besserer,
- Michela Ottolia,
- Debora A. Nicoll,
- Vincent Chaptal,
- Duilio Cascio,
- Kenneth D. Philipson,
- and Jeff Abramson
From the Cover: The second Ca 2+ -binding domain of the Na + –Ca 2+ exchanger is essential for regulation: Crystal structures and mutational analysis
PNAS 2007 104:18467-18472; published ahead of print October 25, 2007, doi:10.1073/pnas.0707417104
- See commentary article on page 18349 in issue 47 of volume 104
Select this article
Biological Sciences - Biophysics:
- Pramodh Vallurupalli,
- D. Flemming Hansen,
- Elliott Stollar,
- Eva Meirovitch,
- and Lewis E. Kay
Measurement of bond vector orientations in invisible excited states of proteins
PNAS 2007 104:18473-18477; published ahead of print November 15, 2007, doi:10.1073/pnas.0708296104
Select this article
Biological Sciences - Biophysics:
- Hui Z. Mao
- and Joachim Weber
Identification of the β TP site in the x-ray structure of F 1 -ATPase as the high-affinity catalytic site
PNAS 2007 104:18478-18483; published ahead of print November 14, 2007, doi:10.1073/pnas.0709322104
Select this article
Biological Sciences - Biophysics:
- Akira Nakamura,
- Chieko Wada,
- and Kunio Miki
Structural basis for regulation of bifunctional roles in replication initiator protein
PNAS 2007 104:18484-18489; published ahead of print November 13, 2007, doi:10.1073/pnas.0705623104
Select this article
Biological Sciences - Biophysics:
- Nathalie Declerck,
- Laurent Bouillaut,
- Denis Chaix,
- Nathalie Rugani,
- Leyla Slamti,
- François Hoh,
- Didier Lereclus,
- and Stefan T. Arold
Structure of PlcR: Insights into virulence regulation and evolution of quorum sensing in Gram-positive bacteria
PNAS 2007 104:18490-18495; published ahead of print November 12, 2007, doi:10.1073/pnas.0704501104
Select this article
Biological Sciences - Biophysics:
- Karunesh Arora
- and Charles L. Brooks, III
Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism
PNAS 2007 104:18496-18501; published ahead of print November 13, 2007, doi:10.1073/pnas.0706443104

Cell Biology

Select this article
Biological Sciences - Cell Biology:
- Anuradha Pradhan,
- Que T. Lambert,
- and Gary W. Reuther
Transformation of hematopoietic cells and activation of JAK2-V617F by IL-27R, a component of a heterodimeric type I cytokine receptor
PNAS 2007 104:18502-18507; published ahead of print November 14, 2007, doi:10.1073/pnas.0702388104
Select this article
Biological Sciences - Cell Biology:
- Miriam Palacios-Callender,
- Veronica Hollis,
- Miriam Mitchison,
- Nanci Frakich,
- David Unitt,
- and Salvador Moncada
Cytochrome c oxidase regulates endogenous nitric oxide availability in respiring cells: A possible explanation for hypoxic vasodilation
PNAS 2007 104:18508-18513; published ahead of print November 14, 2007, doi:10.1073/pnas.0709440104
Open Access Article
Select this article
Biological Sciences - Cell Biology:
- Georgios T. Stathopoulos,
- Taylor P. Sherrill,
- Dong-Sheng Cheng,
- Robert M. Scoggins,
- Wei Han,
- Vasiliy V. Polosukhin,
- Linda Connelly,
- Fiona E. Yull,
- Barbara Fingleton,
- and Timothy S. Blackwell
Epithelial NF-κB activation promotes urethane-induced lung carcinogenesis
PNAS 2007 104:18514-18519; published ahead of print November 13, 2007, doi:10.1073/pnas.0705316104
Select this article
Biological Sciences - Cell Biology:
- Lindsay D. Rogers
- and Leonard J. Foster
The dynamic phagosomal proteome and the contribution of the endoplasmic reticulum
PNAS 2007 104:18520-18525; published ahead of print November 15, 2007, doi:10.1073/pnas.0705801104
Open Access Article
Select this article
Biological Sciences - Cell Biology:
- Yan Zhang
- and David C. Chan
Structural basis for recruitment of mitochondrial fission complexes by Fis1
PNAS 2007 104:18526-18530; published ahead of print November 12, 2007, doi:10.1073/pnas.0706441104

Developmental Biology

Select this article
Biological Sciences - Developmental Biology:
- Alexandra Klaus,
- Yumiko Saga,
- Makoto M. Taketo,
- Eldad Tzahor,
- and Walter Birchmeier
Distinct roles of Wnt/β-catenin and Bmp signaling during early cardiogenesis
PNAS 2007 104:18531-18536; published ahead of print November 13, 2007, doi:10.1073/pnas.0703113104
Select this article
Biological Sciences - Developmental Biology:
- Elena Zvaritch,
- Frederic Depreux,
- Natasha Kraeva,
- Ryan E. Loy,
- Sanjeewa A. Goonasekera,
- Simona Boncompagni,
- Alexander Kraev,
- Anthony O. Gramolini,
- Robert T. Dirksen,
- Clara Franzini-Armstrong,
- Christine E. Seidman,
- J. G. Seidman,
- and David H. MacLennan
An Ryr1 I4895T mutation abolishes Ca 2+ release channel function and delays development in homozygous offspring of a mutant mouse line
PNAS 2007 104:18537-18542; published ahead of print November 14, 2007, doi:10.1073/pnas.0709312104
Select this article
Biological Sciences - Developmental Biology:
- Nanami Senoo-Matsuda
- and Laura A. Johnston
Soluble factors mediate competitive and cooperative interactions between cells expressing different levels of Drosophila Myc
PNAS 2007 104:18543-18548; published ahead of print November 13, 2007, doi:10.1073/pnas.0709021104
Open Access Article
Select this article
Biological Sciences - Developmental Biology:
- Jos Käfer,
- Takashi Hayashi,
- Athanasius F. M. Marée,
- Richard W. Carthew,
- and François Graner
Cell adhesion and cortex contractility determine cell patterning in the Drosophila retina
PNAS 2007 104:18549-18554; published ahead of print November 14, 2007, doi:10.1073/pnas.0704235104

Ecology

Select this article
Biological Sciences - Ecology:
- J. Barlow,
- T. A. Gardner,
- I. S. Araujo,
- T. C. Ávila-Pires,
- A. B. Bonaldo,
- J. E. Costa,
- M. C. Esposito,
- L. V. Ferreira,
- J. Hawes,
- M. I. M. Hernandez,
- M. S. Hoogmoed,
- R. N. Leite,
- N. F. Lo-Man-Hung,
- J. R. Malcolm,
- M. B. Martins,
- L. A. M. Mestre,
- R. Miranda-Santos,
- A. L. Nunes-Gutjahr,
- W. L. Overal,
- L. Parry,
- S. L. Peters,
- M. A. Ribeiro-Junior,
- M. N. F. da Silva,
- C. da Silva Motta,
- and C. A. Peres
Quantifying the biodiversity value of tropical primary, secondary, and plantation forests
PNAS 2007 104:18555-18560; published ahead of print November 14, 2007, doi:10.1073/pnas.0703333104
Select this article
Biological Sciences - Ecology:
- James E. Cloern,
- Alan D. Jassby,
- Janet K. Thompson,
- and Kathryn A. Hieb
A cold phase of the East Pacific triggers new phytoplankton blooms in San Francisco Bay
PNAS 2007 104:18561-18565; published ahead of print November 13, 2007, doi:10.1073/pnas.0706151104
Open

Table of Contents

FROM THE COVER

In This Issue

Decline and fall of the tumor suppressor

Getting a grip on calcium regulation

When HIV spread afar

Carbon cycle conundrums

Substrate activation for O 2 reactions by oxidized metal centers in biology

Inaugural Article: VEGF Trap complex formation measures production rates of VEGF, providing a biomarker for predicting efficacious angiogenic blockade

A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies

Dynamical quorum sensing: Population density encoded in cellular dynamics

Faceting ionic shells into icosahedra via electrostatics

The anomalous behavior of the density of water in the range 30 K < T < 373 K

A self-consistent theory for graphene transport

On anti-portfolio effects in science and technology with application to reaction kinetics, chemical synthesis, and molecular biology

From the Cover: Mapping hydration dynamics around a protein surface

From the Cover: The relative importance of directional change, random walks, and stasis in the evolution of fossil lineages

Attosecond electron pulses for 4D diffraction and microscopy

Anyonic braiding in optical lattices

Optimal savings and the value of population

Genetic diversity of citrus bacterial canker pathogens preserved in herbarium specimens

Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding

Identification of JmjC domain-containing UTX and JMJD3 as histone H3 lysine 27 demethylases

Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states

A quantum-chemical picture of hemoglobin affinity

Identification of enzymes and regulatory proteins in Escherichia coli that are oxidized under nitrogen, carbon, or phosphate starvation

From the Cover: Mapping hydration dynamics around a protein surface

From the Cover: The second Ca 2+ -binding domain of the Na + –Ca 2+ exchanger is essential for regulation: Crystal structures and mutational analysis

Measurement of bond vector orientations in invisible excited states of proteins

Identification of the β TP site in the x-ray structure of F 1 -ATPase as the high-affinity catalytic site

Structural basis for regulation of bifunctional roles in replication initiator protein

Structure of PlcR: Insights into virulence regulation and evolution of quorum sensing in Gram-positive bacteria

Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism

Transformation of hematopoietic cells and activation of JAK2-V617F by IL-27R, a component of a heterodimeric type I cytokine receptor

Cytochrome c oxidase regulates endogenous nitric oxide availability in respiring cells: A possible explanation for hypoxic vasodilation

Epithelial NF-κB activation promotes urethane-induced lung carcinogenesis

The dynamic phagosomal proteome and the contribution of the endoplasmic reticulum

Structural basis for recruitment of mitochondrial fission complexes by Fis1

Distinct roles of Wnt/β-catenin and Bmp signaling during early cardiogenesis

An Ryr1 I4895T mutation abolishes Ca 2+ release channel function and delays development in homozygous offspring of a mutant mouse line

Soluble factors mediate competitive and cooperative interactions between cells expressing different levels of Drosophila Myc

Cell adhesion and cortex contractility determine cell patterning in the Drosophila retina

Quantifying the biodiversity value of tropical primary, secondary, and plantation forests

A cold phase of the East Pacific triggers new phytoplankton blooms in San Francisco Bay