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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
June 20, 2006; 103 (25)
Index By Author
Cover Photo
Masthead (PDF)
FROM THE COVER
Ancestral roots of rice
Stratospheric ice and chlorine reactions
Spermatogonial stem cell renewal
Sequence of nature's smallest nucleus
Plant aluminum tolerance gene
This Week in PNAS
This Week in PNAS
:
In This Issue
PNAS
2006
103
:
9375
-
9376
;
doi:10.1073/iti2506103
Full Text
Full Text (PDF)
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Commentaries
Commentary
:
Lucas R. Hoffman
and
Samuel I. Miller
The systems biology of infection in animal models bears fruit
PNAS
2006
103
:
9377
-
9378
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603266103
Extract
Full Text
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See companion article on page
9268
in issue 24 of volume 103
Commentary
:
Thomas Cavalier-Smith
The tiny enslaved genome of a rhizarian alga
PNAS
2006
103
:
9379
-
9380
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603505103
Extract
Full Text
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See companion article on page
9566
in issue 25 of volume 103
Perspective
Select this article
Perspective
:
Paul Mellars
Why did modern human populations disperse from Africa ca. 60,000 years ago? A new model
PNAS
2006
103
:
9381
-
9386
;
published ahead of print
June 13, 2006
,
doi:10.1073/pnas.0510792103
Abstract
Full Text
Full Text (PDF)
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Profile
Profile
:
Bijal P. Trivedi
Profile of Steven C. Hebert
PNAS
2006
103
:
9387
-
9389
;
published ahead of print
June 13, 2006
,
doi:10.1073/pnas.0604149103
Extract
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See commentary article on page
9390
in issue 25 of volume 103
Physical Sciences
Applied Mathematics
Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Biophysics
:
Nadia Chouaieb
,
Alain Goriely
,
and
John H. Maddocks
Helices
PNAS
2006
103
:
9398
-
9403
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0508370103
Abstract
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Supporting Information
Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Genetics
:
Rui Jiang
,
Zhidong Tu
,
Ting Chen
,
and
Fengzhu Sun
Network motif identification in stochastic networks
PNAS
2006
103
:
9404
-
9409
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0507841103
Abstract
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Supporting Information
Chemistry
Select this article
Physical Sciences - Chemistry
:
Tae Kyu Kim
,
Maciej Lorenc
,
Jae Hyuk Lee
,
Manuela Lo Russo
,
Joonghan Kim
,
Marco Cammarata
,
Qingyu Kong
,
Sylvie Noel
,
Anton Plech
,
Michael Wulff
,
and
Hyotcherl Ihee
Spatiotemporal reaction kinetics of an ultrafast photoreaction pathway visualized by time-resolved liquid x-ray diffraction
PNAS
2006
103
:
9410
-
9415
;
published ahead of print
June 13, 2006
,
doi:10.1073/pnas.0601958103
Abstract
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Supporting Information
Open Access Article
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Physical Sciences - Chemistry
:
Takafumi Ueno
,
Norihiko Yokoi
,
Masaki Unno
,
Toshitaka Matsui
,
Yuichi Tokita
,
Masako Yamada
,
Masao Ikeda-Saito
,
Hiroshi Nakajima
,
and
Yoshihito Watanabe
Design of metal cofactors activated by a protein–protein electron transfer system
PNAS
2006
103
:
9416
-
9421
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0510968103
Abstract
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Supporting Information
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Physical Sciences - Chemistry
:
V. Faye McNeill
,
Thomas Loerting
,
Franz M. Geiger
,
Bernhardt L. Trout
,
and
Mario J. Molina
From the Cover: Hydrogen chloride-induced surface disordering on ice
PNAS
2006
103
:
9422
-
9427
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603494103
Abstract
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Biological Sciences - Biophysics - Physical Sciences - Chemistry
:
Peter J. Bond
,
José D. Faraldo-Gómez
,
Sundeep S. Deol
,
and
Mark S. P. Sansom
Membrane protein dynamics and detergent interactions within a crystal: A simulation study of OmpA
PNAS
2006
103
:
9518
-
9523
;
published ahead of print
June 9, 2006
,
doi:10.1073/pnas.0600398103
Abstract
Full Text
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Supporting Information
Engineering
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Physical Sciences - Engineering
:
Cheryl Wong Po Foo
,
Siddharth V. Patwardhan
,
David J. Belton
,
Brandon Kitchel
,
Daphne Anastasiades
,
Jia Huang
,
Rajesh R. Naik
,
Carole C. Perry
,
and
David L. Kaplan
Novel nanocomposites from spider silk–silica fusion (chimeric) proteins
PNAS
2006
103
:
9428
-
9433
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0601096103
Abstract
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Supporting Figure
Open Access Article
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Physical Sciences - Engineering
:
Zdeněk P. Bažant
and
Sze-Dai Pang
Mechanics-based statistics of failure risk of quasibrittle structures and size effect on safety factors
PNAS
2006
103
:
9434
-
9439
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0602684103
Abstract
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Geology
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Physical Sciences - Geology
:
Karim Benzerara
,
Nicolas Menguy
,
Purificación López-García
,
Tae-Hyun Yoon
,
Józef Kazmierczak
,
Tolek Tyliszczak
,
François Guyot
,
and
Gordon E. Brown, Jr.
Nanoscale detection of organic signatures in carbonate microbialites
PNAS
2006
103
:
9440
-
9445
;
published ahead of print
June 13, 2006
,
doi:10.1073/pnas.0603255103
Abstract
Full Text
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Supporting Figures
Physics
Select this article
Biological Sciences - Biophysics - Physical Sciences - Physics
:
Roderick Y. H. Lim
,
Ning-Ping Huang
,
Joachim Köser
,
Jie Deng
,
K. H. Aaron Lau
,
Kyrill Schwarz-Herion
,
Birthe Fahrenkrog
,
and
Ueli Aebi
Flexible phenylalanine-glycine nucleoporins as entropic barriers to nucleocytoplasmic transport
PNAS
2006
103
:
9512
-
9517
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603521103
Abstract
Full Text
Full Text (PDF)
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Supporting Information
Statistics
Select this article
Physical Sciences - Statistics - Biological Sciences - Evolution
:
Katherina J. Kechris
,
Jason C. Lin
,
Peter J. Bickel
,
and
Alexander N. Glazer
Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study
PNAS
2006
103
:
9584
-
9589
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603534103
Abstract
Full Text
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Supporting Information
Biological Sciences
Applied Biological Sciences
Select this article
Biological Sciences - Applied Biological Sciences
:
Howard G. Damude
,
Hongxiang Zhang
,
Leonard Farrall
,
Kevin G. Ripp
,
Jean-Francois Tomb
,
Dieter Hollerbach
,
and
Narendra S. Yadav
Identification of bifunctional Δ12/ω3 fatty acid desaturases for improving the ratio of ω3 to ω6 fatty acids in microbes and plants
PNAS
2006
103
:
9446
-
9451
;
published ahead of print
June 8, 2006
,
doi:10.1073/pnas.0511079103
Abstract
Full Text
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Supporting Information
Biochemistry
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Biological Sciences - Biochemistry
:
Eberhard Voit
,
Ana Rute Neves
,
and
Helena Santos
The intricate side of systems biology
PNAS
2006
103
:
9452
-
9457
;
published ahead of print
June 9, 2006
,
doi:10.1073/pnas.0603337103
Abstract
Full Text
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Supporting Information
Select this article
Biological Sciences - Biochemistry
:
M. Fleur Sernee
,
Julie E. Ralton
,
Zoran Dinev
,
George N. Khairallah
,
Richard A. O’Hair
,
Spencer J. Williams
,
and
Malcolm J. McConville
Leishmania β-1,2-mannan is assembled on a mannose-cyclic phosphate primer
PNAS
2006
103
:
9458
-
9463
;
published ahead of print
June 9, 2006
,
doi:10.1073/pnas.0603539103
Abstract
Full Text
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Supporting Information
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Biological Sciences - Biochemistry
:
Franziska Bleichert
,
Sander Granneman
,
Yvonne N. Osheim
,
Ann L. Beyer
,
and
Susan J. Baserga
The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation
PNAS
2006
103
:
9464
-
9469
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603673103
Abstract
Full Text
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Supporting Figures
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Biological Sciences - Biochemistry
:
Qi-Zhuang Ye
,
Sheng-Xue Xie
,
Ze-Qiang Ma
,
Min Huang
,
and
Robert P. Hanzlik
Structural basis of catalysis by monometalated methionine aminopeptidase
PNAS
2006
103
:
9470
-
9475
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0602433103
Abstract
Full Text
Full Text (PDF)
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Supporting Tables
Select this article
Biological Sciences - Biochemistry
:
Kazuhiro Yamada
,
Roy A. Gravel
,
Tetsuo Toraya
,
and
Rowena G. Matthews
Human methionine synthase reductase is a molecular chaperone for human methionine synthase
PNAS
2006
103
:
9476
-
9481
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603694103
Abstract
Full Text
Full Text (PDF)
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Supporting Materials and Methods
Select this article
Biological Sciences - Biochemistry
:
Daniela C. Dieterich
,
A. James Link
,
Johannes Graumann
,
David A. Tirrell
,
and
Erin M. Schuman
Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)
PNAS
2006
103
:
9482
-
9487
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0601637103
Abstract
Full Text
Full Text (PDF)
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Supporting Information
Select this article
Biological Sciences - Biochemistry
:
Stephen A. Chappell
,
John Dresios
,
Gerald M. Edelman
,
and
Vincent P. Mauro
Ribosomal shunting mediated by a translational enhancer element that base pairs to 18S rRNA
PNAS
2006
103
:
9488
-
9493
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603597103
Abstract
Full Text
Full Text (PDF)
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Supporting Table
Select this article
Biological Sciences - Biochemistry
:
Muhammad M. Karim
,
Yuri V. Svitkin
,
Avak Kahvejian
,
Gregory De Crescenzo
,
Mauro Costa-Mattioli
,
and
Nahum Sonenberg
A mechanism of translational repression by competition of Paip2 with eIF4G for poly(A) binding protein (PABP) binding
PNAS
2006
103
:
9494
-
9499
;
published ahead of print
June 13, 2006
,
doi:10.1073/pnas.0603701103
Abstract
Full Text
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Biological Sciences - Biochemistry
:
Ludovic Tricoire
,
Keisuke Tsuzuki
,
Olivier Courjean
,
Nathalie Gibelin
,
Gaëlle Bourout
,
Jean Rossier
,
and
Bertrand Lambolez
Calcium dependence of aequorin bioluminescence dissected by random mutagenesis
PNAS
2006
103
:
9500
-
9505
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603176103
Abstract
Full Text
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Supporting Information
Select this article
Biological Sciences - Biochemistry
:
Xiaopeng Hu
,
Sohail Malik
,
Costin Catalin Negroiu
,
Kyle Hubbard
,
Chidambaram Natesa Velalar
,
Brian Hampton
,
Dan Grosu
,
Jennifer Catalano
,
Robert G. Roeder
,
and
Averell Gnatt
A Mediator-responsive form of metazoan RNA polymerase II
PNAS
2006
103
:
9506
-
9511
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603702103
Abstract
Full Text
Full Text (PDF)
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Supporting Figure
Biophysics
Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Biophysics
:
Nadia Chouaieb
,
Alain Goriely
,
and
John H. Maddocks
Helices
PNAS
2006
103
:
9398
-
9403
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0508370103
Abstract
Full Text
Full Text (PDF)
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Supporting Information
Select this article
Biological Sciences - Biophysics - Physical Sciences - Physics
:
Roderick Y. H. Lim
,
Ning-Ping Huang
,
Joachim Köser
,
Jie Deng
,
K. H. Aaron Lau
,
Kyrill Schwarz-Herion
,
Birthe Fahrenkrog
,
and
Ueli Aebi
Flexible phenylalanine-glycine nucleoporins as entropic barriers to nucleocytoplasmic transport
PNAS
2006
103
:
9512
-
9517
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603521103
Abstract
Full Text
Full Text (PDF)
Figures Only
Supporting Information
Select this article
Biological Sciences - Biophysics - Physical Sciences - Chemistry
:
Peter J. Bond
,
José D. Faraldo-Gómez
,
Sundeep S. Deol
,
and
Mark S. P. Sansom
Membrane protein dynamics and detergent interactions within a crystal: A simulation study of OmpA
PNAS
2006
103
:
9518
-
9523
;
published ahead of print
June 9, 2006
,
doi:10.1073/pnas.0600398103
Abstract
Full Text
Full Text (PDF)
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Supporting Information
Cell Biology
Select this article
Biological Sciences - Cell Biology
:
Jon M. Oatley
,
Mary R. Avarbock
,
Aino I. Telaranta
,
Douglas T. Fearon
,
and
Ralph L. Brinster
From the Cover: Identifying genes important for spermatogonial stem cell self-renewal and survival
PNAS
2006
103
:
9524
-
9529
;
published ahead of print
June 1, 2006
,
doi:10.1073/pnas.0603332103
Abstract
Full Text
Full Text (PDF)
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Supporting Information
See commentary article on page
9751
in issue 26 of volume 103
Select this article
Biological Sciences - Cell Biology
:
Thai-Yen Ling
,
Ming-Der Kuo
,
Chung-Leung Li
,
Alice L. Yu
,
Yen-Hua Huang
,
Tsai-Jung Wu
,
You-Chin Lin
,
Shu-Hwa Chen
,
and
John Yu
Identification of pulmonary Oct-4 + stem/progenitor cells and demonstration of their susceptibility to SARS coronavirus (SARS-CoV) infection in vitro
PNAS
2006
103
:
9530
-
9535
;
published ahead of print
June 13, 2006
,
doi:10.1073/pnas.0510232103
Abstract
Full Text
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Supporting Information
Select this article
Biological Sciences - Cell Biology
:
G. M. Rivera
,
S. Antoku
,
S. Gelkop
,
N. Y. Shin
,
S. K. Hanks
,
T. Pawson
,
and
B. J. Mayer
Requirement of Nck adaptors for actin dynamics and cell migration stimulated by platelet-derived growth factor B
PNAS
2006
103
:
9536
-
9541
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0603786103
Abstract
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Supporting Information
Open Access Article
Select this article
Biological Sciences - Cell Biology
:
Kyoko Shirakabe
,
Giuseppina Priori
,
Hideomi Yamada
,
Hideaki Ando
,
Shoko Horita
,
Toshiro Fujita
,
Ichiro Fujimoto
,
Akihiro Mizutani
,
George Seki
,
and
Katsuhiko Mikoshiba
IRBIT, an inositol 1,4,5-trisphosphate receptor-binding protein, specifically binds to and activates pancreas-type Na + /HCO 3 − cotransporter 1 (pNBC1)
PNAS
2006
103
:
9542
-
9547
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0602250103
Abstract
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Biological Sciences - Cell Biology
:
Emilie Gaillard
,
Nathalie Bruck
,
Yann Brelivet
,
Gaétan Bour
,
Sébastien Lalevée
,
Annie Bauer
,
Olivier Poch
,
Dino Moras
,
and
Cécile Rochette-Egly
Phosphorylation by PKA potentiates retinoic acid receptor α activity by means of increasing interaction with and phosphorylation by cyclin H/cdk7
PNAS
2006
103
:
9548
-
9553
;
published ahead of print
June 12, 2006
,
doi:10.1073/pnas.0509717103
Abstract
Full Text
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Developmental Biology
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Biological Sciences - Developmental Biology
:
Morio Ueno
,
Michiru Matsumura
,
Kiichi Watanabe
,
Takahiro Nakamura
,
Fumitaka Osakada
,
Masayo Takahashi
,
Hiroshi Kawasaki
,
Shigeru Kinoshita
,
and
Yoshiki Sasai
Neural conversion of ES cells by an inductive activity on human amniotic membrane matrix
PNAS
2006
103
:
9554
-
9559
;
published ahead of print
June 9, 2006
,
doi:10.1073/pnas.0600104103
Abstract
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Supporting Information
Environmental Sciences
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Biological Sciences - Environmental Sciences
:
Sarah E. Gilman
,
David S. Wethey
,
and
Brian Helmuth
Variation in the sensitivity of organismal body temperature to climate change over local and geographic scales
PNAS
2006
103
:
9560
-
9565
;
published ahead of print
June 8, 2006
,
doi:10.1073/pnas.0510992103
Abstract
Full Text
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Evolution
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Biological Sciences - Evolution
:
Paul R. Gilson
,
Vanessa Su
,
Claudio H. Slamovits
,
Michael E. Reith
,
Patrick J. Keeling
,
and
Geoffrey I. McFadden
From the Cover: Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature’s smallest nucleus
PNAS
2006
103
:
9566
-
9571
;
published ahead of print
June 7, 2006
,
doi:10.1073/pnas.0600707103
Abstract
Full Text
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Supporting Information
See commentary article on page
9379
in issue 25 of volume 103
Select this article
Biological Sciences - Evolution
:
Kylie A. Mullin
,
Liting Lim
,
Stuart A. Ralph
,
Timothy P. Spurck
,
Emanuela Handman
,
and
Geoffrey I. McFadden
Membrane transporters in the relict plastid of malaria parasites
PNAS
2006
103
:
9572
-
9577
;
published ahead of print
June 7, 2006
,
doi:10.1073/pnas.0602293103
Abstract
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Biological Sciences - Evolution
:
Jason P. Londo
,
Yu-Chung Chiang
,
Kuo-Hsiang Hung
,
Tzen-Yuh Chiang
,
and
Barbara A. Schaal
From the Cover: Phylogeography of Asian wild rice, Oryza rufipogon , reveals multiple independent domestications of cultivated rice, Oryza sativa
PNAS
2006
103
:
9578
-
9583
;
published ahead of print
June 9, 2006
,
doi:10.1073/pnas.0603152103
Abstract
Full Text
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Supporting Information
Select this article
Physical Sciences - Statistics - Biological Sciences - Evolution
:
Katherina J. Kechris
,
Jason C. Lin
,
Peter J. Bickel
,
and
Alexander N. Glazer
Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study
PNAS
2006
103
:
9584
-
9589
;
published ahead of print
June 12, 2006
,