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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
April 4, 2006; 103 (14)
Index By Author
Cover Photo
Masthead (PDF)
FROM THE COVER
Modeling neuronal oxidative damage
Nitrogenase cofactor synthesis
Conservation and land market feedbacks
Kidney disease kinase pathway
HIV capsids and infection restriction
This Week in PNAS
This Week in PNAS
:
In This Issue
PNAS
2006
103
:
5243
-
5244
;
doi:10.1073/iti1406103
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Commentaries
Commentary
:
Stephen Polasky
You can't always get what you want: Conservation planning with feedback effects
PNAS
2006
103
:
5245
-
5246
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601348103
Extract
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See companion article on page
5403
in issue 14 of volume 103
Commentary
:
Keith E. Mostov
mTOR is out of control in polycystic kidney disease
PNAS
2006
103
:
5247
-
5248
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601352103
Extract
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See companion article on page
5466
in issue 14 of volume 103
Commentary
:
Michael Emerman
How TRIM5α defends against retroviral invasions
PNAS
2006
103
:
5249
-
5250
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601373103
Extract
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5514
in issue 14 of volume 103
Perspective
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Perspective
:
David A. LaVan
and
Jennifer N. Cha
Approaches for biological and biomimetic energy conversion
PNAS
2006
103
:
5251
-
5255
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0506694103
Abstract
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Profiles
Profile
:
Tinsley H. Davis
Profile of Robert M. Stroud
PNAS
2006
103
:
5256
-
5258
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600255103
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See commentary article on page
18773
in issue 52 of volume 102
Profile
:
Tinsley H. Davis
Profile of Peter Walter
PNAS
2006
103
:
5259
-
5261
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600257103
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See commentary article on page
18773
in issue 52 of volume 102
Physical Sciences
Applied Mathematics
Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Biophysics
:
Bernardo Pando
,
Silvina Ponce Dawson
,
Don-On Daniel Mak
,
and
John E. Pearson
Messages diffuse faster than messengers
PNAS
2006
103
:
5338
-
5342
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0509576103
Abstract
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Open Access Article
Chemistry
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Anne E. Counterman
,
Terrence G. D'Onofrio
,
Anne Milasincic Andrews
,
and
Paul S. Weiss
From the Cover: A physical model of axonal damage due to oxidative stress
PNAS
2006
103
:
5262
-
5266
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0504134103
Abstract
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Christopher W. M. Kay
,
Bina Mennenga
,
Helmut Görisch
,
and
Robert Bittl
Substrate binding in quinoprotein ethanol dehydrogenase from Pseudomonas aeruginosa studied by electron-nuclear double resonance
PNAS
2006
103
:
5267
-
5272
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0509667103
Abstract
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Rudi Berera
,
Christian Herrero
,
Ivo H. M. van Stokkum
,
Mikas Vengris
,
Gerdenis Kodis
,
Rodrigo E. Palacios
,
Herbert van Amerongen
,
Rienk van Grondelle
,
Devens Gust
,
Thomas A. Moore
,
Ana L. Moore
,
and
John T. M. Kennis
A simple artificial light-harvesting dyad as a model for excess energy dissipation in oxygenic photosynthesis
PNAS
2006
103
:
5343
-
5348
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0508530103
Abstract
Full Text
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Supporting Information
Open Access Article
Physics
Select this article
Physical Sciences - Physics - Biological Sciences - Biophysics
:
M. Muthukumar
and
C. Y. Kong
Simulation of polymer translocation through protein channels
PNAS
2006
103
:
5273
-
5278
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0510725103
Abstract
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Physical Sciences - Physics - Biological Sciences - Biophysics
:
Naoko Nakagawa
and
Michel Peyrard
The inherent structure landscape of a protein
PNAS
2006
103
:
5279
-
5284
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600102103
Abstract
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Social Sciences
Psychology
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Social Sciences - Psychology
:
Marie L. Smith
,
Frédéric Gosselin
,
and
Philippe G. Schyns
Perceptual moments of conscious visual experience inferred from oscillatory brain activity
PNAS
2006
103
:
5626
-
5631
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0508972103
Abstract
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Supporting Figure
Biological Sciences
Agricultural Sciences
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Biological Sciences - Agricultural Sciences
:
Michael C. Golding
,
Charles R. Long
,
Michelle A. Carmell
,
Gregory J. Hannon
,
and
Mark E. Westhusin
Suppression of prion protein in livestock by RNA interference
PNAS
2006
103
:
5285
-
5290
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600813103
Abstract
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Biochemistry
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Biological Sciences - Biochemistry
:
Kyouhei Arita
,
Toshiyuki Shimizu
,
Hiroshi Hashimoto
,
Yuji Hidaka
,
Michiyuki Yamada
,
and
Mamoru Sato
Structural basis for histone N-terminal recognition by human peptidylarginine deiminase 4
PNAS
2006
103
:
5291
-
5296
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0509639103
Abstract
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Biological Sciences - Biochemistry
:
Leonardo Curatti
,
Paul W. Ludden
,
and
Luis M. Rubio
From the Cover: NifB-dependent in vitro synthesis of the iron–molybdenum cofactor of nitrogenase
PNAS
2006
103
:
5297
-
5301
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601115103
Abstract
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Supporting Information
Open Access Article
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Biological Sciences - Biochemistry
:
Oleg Dmitriev
,
Ruslan Tsivkovskii
,
Frits Abildgaard
,
Clinton T. Morgan
,
John L. Markley
,
and
Svetlana Lutsenko
Solution structure of the N-domain of Wilson disease protein: Distinct nucleotide-binding environment and effects of disease mutations
PNAS
2006
103
:
5302
-
5307
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0507416103
Abstract
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Supporting Information
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Biological Sciences - Biochemistry
:
Adam Rosendorff
,
Shuhei Sakakibara
,
Sixin Lu
,
Elliott Kieff
,
Yan Xuan
,
Alessandra DiBacco
,
Yujiang Shi
,
Yang Shi
,
and
Grace Gill
NXP-2 association with SUMO-2 depends on lysines required for transcriptional repression
PNAS
2006
103
:
5308
-
5313
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601066103
Abstract
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Biological Sciences - Biochemistry
:
Jonathan R. Lai
,
Michael A. Fischbach
,
David R. Liu
,
and
Christopher T. Walsh
A protein interaction surface in nonribosomal peptide synthesis mapped by combinatorial mutagenesis and selection
PNAS
2006
103
:
5314
-
5319
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601038103
Abstract
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Supporting Information
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Biological Sciences - Biochemistry
:
Lior David
,
Wolfgang Huber
,
Marina Granovskaia
,
Joern Toedling
,
Curtis J. Palm
,
Lee Bofkin
,
Ted Jones
,
Ronald W. Davis
,
and
Lars M. Steinmetz
A high-resolution map of transcription in the yeast genome
PNAS
2006
103
:
5320
-
5325
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0601091103
Abstract
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Supporting Information
Open Access Article
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Biological Sciences - Biochemistry
:
Sijiu Liu
,
Jin-Peng Sun
,
Bo Zhou
,
and
Zhong-Yin Zhang
Structural basis of docking interactions between ERK2 and MAP kinase phosphatase 3
PNAS
2006
103
:
5326
-
5331
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0510506103
Abstract
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Biological Sciences - Biochemistry
:
Irina L. Grigorova
,
Naum J. Phleger
,
Vivek K. Mutalik
,
and
Carol A. Gross
Insights into transcriptional regulation and σ competition from an equilibrium model of RNA polymerase binding to DNA
PNAS
2006
103
:
5332
-
5337
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600828103
Abstract
Full Text
Full Text (PDF)
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Supporting Information
Biophysics
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Anne E. Counterman
,
Terrence G. D'Onofrio
,
Anne Milasincic Andrews
,
and
Paul S. Weiss
From the Cover: A physical model of axonal damage due to oxidative stress
PNAS
2006
103
:
5262
-
5266
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0504134103
Abstract
Full Text
Full Text (PDF)
Figures Only
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Christopher W. M. Kay
,
Bina Mennenga
,
Helmut Görisch
,
and
Robert Bittl
Substrate binding in quinoprotein ethanol dehydrogenase from Pseudomonas aeruginosa studied by electron-nuclear double resonance
PNAS
2006
103
:
5267
-
5272
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0509667103
Abstract
Full Text
Full Text (PDF)
Figures Only
Select this article
Physical Sciences - Physics - Biological Sciences - Biophysics
:
M. Muthukumar
and
C. Y. Kong
Simulation of polymer translocation through protein channels
PNAS
2006
103
:
5273
-
5278
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0510725103
Abstract
Full Text
Full Text (PDF)
Figures Only
Select this article
Physical Sciences - Physics - Biological Sciences - Biophysics
:
Naoko Nakagawa
and
Michel Peyrard
The inherent structure landscape of a protein
PNAS
2006
103
:
5279
-
5284
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600102103
Abstract
Full Text
Full Text (PDF)
Figures Only
Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Biophysics
:
Bernardo Pando
,
Silvina Ponce Dawson
,
Don-On Daniel Mak
,
and
John E. Pearson
Messages diffuse faster than messengers
PNAS
2006
103
:
5338
-
5342
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0509576103
Abstract
Full Text
Full Text (PDF)
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Open Access Article
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Rudi Berera
,
Christian Herrero
,
Ivo H. M. van Stokkum
,
Mikas Vengris
,
Gerdenis Kodis
,
Rodrigo E. Palacios
,
Herbert van Amerongen
,
Rienk van Grondelle
,
Devens Gust
,
Thomas A. Moore
,
Ana L. Moore
,
and
John T. M. Kennis
A simple artificial light-harvesting dyad as a model for excess energy dissipation in oxygenic photosynthesis
PNAS
2006
103
:
5343
-
5348
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0508530103
Abstract
Full Text
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Supporting Information
Open Access Article
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Biological Sciences - Biophysics
:
Arjun Raj
and
Charles S. Peskin
The influence of chromosome flexibility on chromosome transport during anaphase A
PNAS
2006
103
:
5349
-
5354
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0601215103
Abstract
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Biological Sciences - Biophysics
:
Sabrina Gazzarrini
,
Ming Kang
,
Svetlana Epimashko
,
James L. Van Etten
,
Jack Dainty
,
Gerhard Thiel
,
and
Anna Moroni
Chlorella virus MT325 encodes water and potassium channels that interact synergistically
PNAS
2006
103
:
5355
-
5360
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0600848103
Abstract
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Biological Sciences - Biophysics
:
Kira M. S. Misura
,
Dylan Chivian
,
Carol A. Rohl
,
David E. Kim
,
and
David Baker
Physically realistic homology models built with rosetta can be more accurate than their templates
PNAS
2006
103
:
5361
-
5366
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0509355103
Abstract
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Biological Sciences - Biophysics
:
Nobuyasu Koga
and
Shoji Takada
Folding-based molecular simulations reveal mechanisms of the rotary motor F 1 –ATPase
PNAS
2006
103
:
5367
-
5372
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0509642103
Abstract
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Cell Biology
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Biological Sciences - Cell Biology
:
Federico Coluccio Leskow
,
Beth A. Holloway
,
HongBin Wang
,
Mary C. Mullins
,
and
Marcelo G. Kazanietz
The zebrafish homologue of mammalian chimerin Rac-GAPs is implicated in epiboly progression during development
PNAS
2006
103
:
5373
-
5378
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0508585103
Abstract
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Biological Sciences - Cell Biology
:
Marisol Quintero
,
Sergio L. Colombo
,
Andrew Godfrey
,
and
Salvador Moncada
Mitochondria as signaling organelles in the vascular endothelium
PNAS
2006
103
:
5379
-
5384
;
published ahead of print
March 24, 2006
,
doi:10.1073/pnas.0601026103
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Biological Sciences - Cell Biology
:
Laurin M. Hanft
,
Inna N. Rybakova
,
Jitandrakumar R. Patel
,
Jill A. Rafael-Fortney
,
and
James M. Ervasti
Cytoplasmic γ-actin contributes to a compensatory remodeling response in dystrophin-deficient muscle
PNAS
2006
103
:
5385
-
5390
;
published ahead of print
March 24, 2006
,
doi:10.1073/pnas.0600980103
Abstract
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Biological Sciences - Cell Biology
:
Marjaana Nousiainen
,
Herman H. W. Silljé
,
Guido Sauer
,
Erich A. Nigg
,
and
Roman Körner
Phosphoproteome analysis of the human mitotic spindle
PNAS
2006
103
:
5391
-
5396
;
published ahead of print
March 24, 2006
,
doi:10.1073/pnas.0507066103
Abstract
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Developmental Biology
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Biological Sciences - Developmental Biology
:
Menno P. Creyghton
,
Giulietta Roël
,
Pieter J. A. Eichhorn
,
Liesbeth C. Vredeveld
,
Olivier Destrée
,
and
René Bernards
PR130 is a modulator of the Wnt-signaling cascade that counters repression of the antagonist Naked cuticle
PNAS
2006
103
:
5397
-
5402
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0507237103
Abstract
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Ecology
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Biological Sciences - Ecology - Biological Sciences - Sustainability Science
:
Paul R. Armsworth
,
Gretchen C. Daily
,
Peter Kareiva
,
and
James N. Sanchirico
From the Cover: Land market feedbacks can undermine biodiversity conservation
PNAS
2006
103
:
5403
-
5408
;
published ahead of print
March 22, 2006
,
doi:10.1073/pnas.0505278103
Abstract
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See commentary article on page
5245
in issue 14 of volume 103
Environmental Sciences
Select this article
Biological Sciences - Environmental Sciences
:
My Hang V. Huynh
,
Michael A. Hiskey
,
Thomas J. Meyer
,
and
Modi Wetzler
Green primaries: Environmentally friendly energetic complexes
PNAS
2006
103
:
5409
-
5412
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0600827103
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Biological Sciences - Environmental Sciences
:
Om Parkash Dhankher
,
Barry P. Rosen
,
Elizabeth C. McKinney
,
and
Richard B. Meagher
Hyperaccumulation of arsenic in the shoots of Arabidopsis silenced for arsenate reductase (ACR2)
PNAS
2006
103
:
5413
-
5418
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0509770102
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Evolution
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Biological Sciences - Evolution
:
Stefan Tümpel
,
Francisco Cambronero
,
Leanne M. Wiedemann
,
and
Robb Krumlauf
Evolution of cis elements in the differential expression of two Hoxa2 coparalogous genes in pufferfish ( Takifugu rubripes )
PNAS
2006
103
:
5419
-
5424
;
published ahead of print
March 28, 2006
,
doi:10.1073/pnas.0600993103
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Biological Sciences - Evolution
:
Andrew Whitehead
and
Douglas L. Crawford
Neutral and adaptive variation in gene expression
PNAS
2006
103
:
5425
-
5430
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0507648103
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Biological Sciences - Evolution
:
Barry G. Hall
Simple and accurate estimation of ancestral protein sequences
PNAS
2006
103
:
5431
-
5436
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0508991103
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Biological Sciences - Evolution
:
Marcelo F. Tejedor
,
Adán A. Tauber
,
Alfred L. Rosenberger
,
Carl C. Swisher, III
,
and
María E. Palacios
New primate genus from the Miocene of Argentina
PNAS
2006
103
:
5437
-
5441
;
published ahead of print
March 27, 2006
,
doi:10.1073/pnas.0506126103
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Biological Sciences - Evolution
:
Akiko Tomitani
,
Andrew H. Knoll
,
Colleen M. Cavanaugh
,
and
Terufumi Ohno
The evoluti