PNAS — Table of Contents — January 3, 2006, 103 (1)

January 3, 2006; 103 (1)

FROM THE COVER

Commentaries

Commentary:
- Roger M. Burnett
More barrels from the viral tree of life
PNAS 2006 103:3-4; published ahead of print December 27, 2005, doi:10.1073/pnas.0509852102
- See companion article on page 18944 in issue 52 of volume 102
Commentary:
- Alan Feduccia
Mesozoic aviary takes form
PNAS 2006 103:5-6; published ahead of print December 27, 2005, doi:10.1073/pnas.0509970102
- See companion article on page 18998 in issue 52 of volume 102

In This Issue

In This Issue:
This Week in PNAS
PNAS 2006 103:1-2; doi:10.1073/iti0106103

Profile

Profile:
- Nick Zagorski
Profile of Xiaodong Wang
PNAS 2006 103:7-9; published ahead of print December 27, 2005, doi:10.1073/pnas.0509187103
- See commentary article on page 17545 in issue 49 of volume 102

Physical Sciences

Chemistry

Select this article
Physical Sciences - Chemistry:
- Takahito Ohshiro
- and Yoshio Umezawa
Complementary base-pair-facilitated electron tunneling for electrically pinpointing complementary nucleobases
PNAS 2006 103:10-14; published ahead of print December 22, 2005, doi:10.1073/pnas.0506130103
Select this article
Physical Sciences - Chemistry - Biological Sciences - Immunology:
- Cheng-Yuan Huang,
- Desiree A. Thayer,
- Aileen Y. Chang,
- Michael D. Best,
- Julia Hoffmann,
- Steve Head,
- and Chi-Huey Wong
Carbohydrate microarray for profiling the antibodies interacting with Globo H tumor antigen
PNAS 2006 103:15-20; published ahead of print December 22, 2005, doi:10.1073/pnas.0509693102

Computer Sciences

Select this article
Physical Sciences - Computer Sciences - Biological Sciences - Genetics:
- Fenglou Mao,
- Zhengchang Su,
- Victor Olman,
- Phuongan Dam,
- Zhijie Liu,
- and Ying Xu
Mapping of orthologous genes in the context of biological pathways: An application of integer programming
PNAS 2006 103:129-134; published ahead of print December 22, 2005, doi:10.1073/pnas.0509737102
Select this article
Physical Sciences - Computer Sciences - Biological Sciences - Genetics:
- Eric T. Wang,
- Greg Kodama,
- Pierre Baldi,
- and Robert K. Moyzis
Global landscape of recent inferred Darwinian selection for Homo sapiens
PNAS 2006 103:135-140; published ahead of print December 21, 2005, doi:10.1073/pnas.0509691102

Social Sciences

Anthropology

Select this article
Social Sciences - Anthropology:
- C. Loring Brace,
- Noriko Seguchi,
- Conrad B. Quintyn,
- Sherry C. Fox,
- A. Russell Nelson,
- Sotiris K. Manolis,
- and Pan Qifeng
The questionable contribution of the Neolithic and the Bronze Age to European craniofacial form
PNAS 2006 103:242-247; published ahead of print December 21, 2005, doi:10.1073/pnas.0509801102

Biological Sciences

Biophysics

Select this article
Biological Sciences - Biophysics:
- M. Capitanio,
- M. Canepari,
- P. Cacciafesta,
- V. Lombardi,
- R. Cicchi,
- M. Maffei,
- F. S. Pavone,
- and R. Bottinelli
Two independent mechanical events in the interaction cycle of skeletal muscle myosin with actin
PNAS 2006 103:87-92; published ahead of print December 21, 2005, doi:10.1073/pnas.0506830102
Select this article
Biological Sciences - Biophysics:
- Mai Suan Li,
- Chin-Kun Hu,
- Dmitri K. Klimov,
- and D. Thirumalai
Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions
PNAS 2006 103:93-98; published ahead of print December 22, 2005, doi:10.1073/pnas.0503758103
Select this article
Biological Sciences - Biophysics:
- Joerg Gsponer,
- Harri Hopearuoho,
- Sara B.-M. Whittaker,
- Graham R. Spence,
- Geoffrey R. Moore,
- Emanuele Paci,
- Sheena E. Radford,
- and Michele Vendruscolo
Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7
PNAS 2006 103:99-104; published ahead of print December 21, 2005, doi:10.1073/pnas.0508667102

Cell Biology

Select this article
Biological Sciences - Cell Biology:
- Michal Safran,
- William Y. Kim,
- Fionnuala O'Connell,
- Lee Flippin,
- Volkmar Günzler,
- James W. Horner,
- Ronald A. DePinho,
- and William G. Kaelin, Jr.
From the Cover: Mouse model for noninvasive imaging of HIF prolyl hydroxylase activity: Assessment of an oral agent that stimulates erythropoietin production
PNAS 2006 103:105-110; published ahead of print December 22, 2005, doi:10.1073/pnas.0509459103
Select this article
Biological Sciences - Cell Biology:
- Matthias Groszer,
- Rebecca Erickson,
- Deirdre D. Scripture-Adams,
- Joseph D. Dougherty,
- Janel Le Belle,
- Jerome A. Zack,
- Daniel H. Geschwind,
- Xin Liu,
- Harley I. Kornblum,
- and Hong Wu
PTEN negatively regulates neural stem cell self-renewal by modulating G 0 -G 1 cell cycle entry
PNAS 2006 103:111-116; published ahead of print December 22, 2005, doi:10.1073/pnas.0509939103

Environmental Sciences

Select this article
Biological Sciences - Environmental Sciences:
- Sun-Hee Hong,
- John Bunge,
- Sun-Ok Jeon,
- and Slava S. Epstein
Predicting microbial species richness
PNAS 2006 103:117-122; published ahead of print December 20, 2005, doi:10.1073/pnas.0507245102

Genetics

Select this article
Biological Sciences - Genetics:
- Daniel Teupser,
- Marietta Tan,
- Adam D. Persky,
- and Jan L. Breslow
Atherosclerosis quantitative trait loci are sex- and lineage-dependent in an intercross of C57BL/6 and FVB/N low-density lipoprotein receptor –/– mice
PNAS 2006 103:123-128; published ahead of print December 27, 2005, doi:10.1073/pnas.0509570102
Select this article
Physical Sciences - Computer Sciences - Biological Sciences - Genetics:
- Fenglou Mao,
- Zhengchang Su,
- Victor Olman,
- Phuongan Dam,
- Zhijie Liu,
- and Ying Xu
Mapping of orthologous genes in the context of biological pathways: An application of integer programming
PNAS 2006 103:129-134; published ahead of print December 22, 2005, doi:10.1073/pnas.0509737102
Select this article
Physical Sciences - Computer Sciences - Biological Sciences - Genetics:
- Eric T. Wang,
- Greg Kodama,
- Pierre Baldi,
- and Robert K. Moyzis
Global landscape of recent inferred Darwinian selection for Homo sapiens
PNAS 2006 103:135-140; published ahead of print December 21, 2005, doi:10.1073/pnas.0509691102

Immunology

Select this article
Physical Sciences - Chemistry - Biological Sciences - Immunology:
- Cheng-Yuan Huang,
- Desiree A. Thayer,
- Aileen Y. Chang,
- Michael D. Best,
- Julia Hoffmann,
- Steve Head,
- and Chi-Huey Wong
Carbohydrate microarray for profiling the antibodies interacting with Globo H tumor antigen
PNAS 2006 103:15-20; published ahead of print December 22, 2005, doi:10.1073/pnas.0509693102
Select this article
Biological Sciences - Immunology:
- Mikhail A. Gavrilin,
- Imad J. Bouakl,
- Nina L. Knatz,
- Michelle D. Duncan,
- Mark W. Hall,
- John S. Gunn,
- and Mark D. Wewers
Internalization and phagosome escape required for Francisella to induce human monocyte IL-1β processing and release
PNAS 2006 103:141-146; published ahead of print December 22, 2005, doi:10.1073/pnas.0504271103
Select this article
Biological Sciences - Immunology:
- Jianping Yang,
- Stephanie P. Huck,
- Rebecca S. McHugh,
- Ian F. Hermans,
- and Franca Ronchese
Perforin-dependent elimination of dendritic cells regulates the expansion of antigen-specific CD8 + T cells in vivo
PNAS 2006 103:147-152; published ahead of print December 22, 2005, doi:10.1073/pnas.0509054103
Select this article
Biological Sciences - Immunology:
- Yuko Kawakami,
- Naoki Inagaki,
- Shahram Salek-Ardakani,
- Jiro Kitaura,
- Hiroyuki Tanaka,
- Koichi Nagao,
- Yu Kawakami,
- Wenbin Xiao,
- Hiroichi Nagai,
- Michael Croft,
- and Toshiaki Kawakami
Regulation of dendritic cell maturation and function by Bruton's tyrosine kinase via IL-10 and Stat3
PNAS 2006 103:153-158; published ahead of print December 21, 2005, doi:10.1073/pnas.0509784103

Medical Sciences

Select this article
Biological Sciences - Medical Sciences:
- Ilia Fishbein,
- Ivan S. Alferiev,
- Origene Nyanguile,
- Richard Gaster,
- John M. Vohs,
- Gordon S. Wong,
- Howard Felderman,
- I-Wei Chen,
- Hoon Choi,
- Robert L. Wilensky,
- and Robert J. Levy
Bisphosphonate-mediated gene vector delivery from the metal surfaces of stents
PNAS 2006 103:159-164; published ahead of print December 21, 2005, doi:10.1073/pnas.0502945102

Microbiology

Select this article
Biological Sciences - Microbiology:
- Lawrence A. Klobutcher,
- Katerina Ragkousi,
- and Peter Setlow
The Bacillus subtilis spore coat provides “eat resistance” during phagocytic predation by the protozoan Tetrahymena thermophila
PNAS 2006 103:165-170; published ahead of print December 21, 2005, doi:10.1073/pnas.0507121102
Select this article
Biological Sciences - Microbiology:
- Isabelle Ventre,
- Andrew L. Goodman,
- Isabelle Vallet-Gely,
- Perrine Vasseur,
- Chantal Soscia,
- Søren Molin,
- Sophie Bleves,
- Andrée Lazdunski,
- Stephen Lory,
- and Alain Filloux
Multiple sensors control reciprocal expression of Pseudomonas aeruginosa regulatory RNA and virulence genes
PNAS 2006 103:171-176; published ahead of print December 22, 2005, doi:10.1073/pnas.0507407103
Select this article
Biological Sciences - Microbiology:
- Frank P. Mockenhaupt,
- Jakob P. Cramer,
- Lutz Hamann,
- Miriam S. Stegemann,
- Jana Eckert,
- Na-Ri Oh,
- Rowland N. Otchwemah,
- Ekkehart Dietz,
- Stephan Ehrhardt,
- Nicolas W. J. Schröder,
- Ulrich Bienzle,
- and Ralf R. Schumann
Toll-like receptor (TLR) polymorphisms in African children: Common TLR-4 variants predispose to severe malaria
PNAS 2006 103:177-182; published ahead of print December 21, 2005, doi:10.1073/pnas.0506803102

Neuroscience

Select this article
Biological Sciences - Neuroscience:
- Jason I. Kass
- and Isabelle M. Mintz
Silent plateau potentials, rhythmic bursts, and pacemaker firing: Three patterns of activity that coexist in quadristable subthalamic neurons
PNAS 2006 103:183-188; published ahead of print December 22, 2005, doi:10.1073/pnas.0506781102
Select this article
Biological Sciences - Neuroscience:
- M. D. Hunter,
- S. B. Eickhoff,
- T. W. R. Miller,
- T. F. D. Farrow,
- I. D. Wilkinson,
- and P. W. R. Woodruff
Neural activity in speech-sensitive auditory cortex during silence
PNAS 2006 103:189-194; published ahead of print December 21, 2005, doi:10.1073/pnas.0506268103
Select this article
Biological Sciences - Neuroscience:
- Stefan Berger,
- David P. Wolfer,
- Oliver Selbach,
- Heike Alter,
- Gitta Erdmann,
- Holger M. Reichardt,
- Aisa N. Chepkova,
- Hans Welzl,
- Helmut L. Haas,
- Hans-Peter Lipp,
- and Günther Schütz
Loss of the limbic mineralocorticoid receptor impairs behavioral plasticity
PNAS 2006 103:195-200; published ahead of print December 20, 2005, doi:10.1073/pnas.0503878102

Table of Contents

FROM THE COVER

More barrels from the viral tree of life

Mesozoic aviary takes form

This Week in PNAS

Profile of Xiaodong Wang

Complementary base-pair-facilitated electron tunneling for electrically pinpointing complementary nucleobases

Carbohydrate microarray for profiling the antibodies interacting with Globo H tumor antigen

Mapping of orthologous genes in the context of biological pathways: An application of integer programming

Global landscape of recent inferred Darwinian selection for Homo sapiens

The questionable contribution of the Neolithic and the Bronze Age to European craniofacial form

From the Cover: Protein fucosylation regulates synapsin Ia/Ib expression and neuronal morphology in primary hippocampal neurons

From the Cover: Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXα, a key enzyme in the biosynthesis of phycocyanobilin

Evidence for the direct involvement of βTrCP in Gli3 protein processing

Specific, efficient, and selective inhibition of prokaryotic translation initiation by a novel peptide antibiotic

PDSM, a motif for phosphorylation-dependent SUMO modification

Molecular cloning, expression, and structural prediction of deoxyhypusine hydroxylase: A HEAT-repeat-containing metalloenzyme

V600E B-Raf requires the Hsp90 chaperone for stability and is degraded in response to Hsp90 inhibitors

Tyrosine phosphorylation acts as a molecular switch to full-scale activation of the eIF2α RNA-dependent protein kinase

Intraprotein transfer of the quinone analogue inhibitor 2,5-dibromo-3-methyl-6-isopropyl- p -benzoquinone in the cytochrome b 6 f complex

CYP27B1 null mice with LacZ reporter gene display no 25-hydroxyvitamin D 3 -1α-hydroxylase promoter activity in the skin

A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme

Two independent mechanical events in the interaction cycle of skeletal muscle myosin with actin

Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions

Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7

From the Cover: Mouse model for noninvasive imaging of HIF prolyl hydroxylase activity: Assessment of an oral agent that stimulates erythropoietin production

PTEN negatively regulates neural stem cell self-renewal by modulating G 0 -G 1 cell cycle entry

Predicting microbial species richness

Atherosclerosis quantitative trait loci are sex- and lineage-dependent in an intercross of C57BL/6 and FVB/N low-density lipoprotein receptor –/– mice

Mapping of orthologous genes in the context of biological pathways: An application of integer programming

Global landscape of recent inferred Darwinian selection for Homo sapiens

Carbohydrate microarray for profiling the antibodies interacting with Globo H tumor antigen

Internalization and phagosome escape required for Francisella to induce human monocyte IL-1β processing and release

Perforin-dependent elimination of dendritic cells regulates the expansion of antigen-specific CD8 + T cells in vivo

Regulation of dendritic cell maturation and function by Bruton's tyrosine kinase via IL-10 and Stat3

Bisphosphonate-mediated gene vector delivery from the metal surfaces of stents

The Bacillus subtilis spore coat provides “eat resistance” during phagocytic predation by the protozoan Tetrahymena thermophila

Multiple sensors control reciprocal expression of Pseudomonas aeruginosa regulatory RNA and virulence genes

Toll-like receptor (TLR) polymorphisms in African children: Common TLR-4 variants predispose to severe malaria

Silent plateau potentials, rhythmic bursts, and pacemaker firing: Three patterns of activity that coexist in quadristable subthalamic neurons

Neural activity in speech-sensitive auditory cortex during silence

Loss of the limbic mineralocorticoid receptor impairs behavioral plasticity