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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
February 15, 2005; 102 (7)
Index By Author
Cover Photo
Masthead (PDF)
FROM THE COVER
H2 and bioenergetics in geothermal ecosystems
Nanoparticle detection of pathogenic biomarker
Multisensory cues in frog behavior
Comparative genomics identifies noncoding RNAs
Grammar emergence in a new language
Commentaries
Commentary
:
Christine D. Keating
Nanoscience enables ultrasensitive detection of Alzheimer's biomarker
PNAS
2005
102
:
2263
-
2264
;
published ahead of print
February 9, 2005
,
doi:10.1073/pnas.0500024102
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2273
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Commentary
:
Jeffrey Skolnick
Putting the pathway back into protein folding
PNAS
2005
102
:
2265
-
2266
;
published ahead of print
February 9, 2005
,
doi:10.1073/pnas.0500128102
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2362
in issue 7 of volume 102
Commentary
:
Ron Hoy
Animal awareness: The (un)binding of multisensory cues in decision making by animals
PNAS
2005
102
:
2267
-
2268
;
published ahead of print
February 9, 2005
,
doi:10.1073/pnas.0500093102
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2425
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Commentary
:
Vincent Moulton
Tracking down noncoding RNAs
PNAS
2005
102
:
2269
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2270
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published ahead of print
February 9, 2005
,
doi:10.1073/pnas.0500129102
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Commentary
:
Susan Goldin-Meadow
Watching language grow
PNAS
2005
102
:
2271
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2272
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published ahead of print
February 9, 2005
,
doi:10.1073/pnas.0500166102
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In This Issue
In This Issue
:
This Week in PNAS
PNAS
2005
102
:
2261
;
doi:10.1073/iti0705102
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Physical Sciences
Applied Physical Sciences
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Physical Sciences - Applied Physical Sciences
:
Dimitra G. Georganopoulou
,
Lei Chang
,
Jwa-Min Nam
,
C. Shad Thaxton
,
Elliott J. Mufson
,
William L. Klein
,
and
Chad A. Mirkin
From the Cover: Nanoparticle-based detection in cerebral spinal fluid of a soluble pathogenic biomarker for Alzheimer's disease
PNAS
2005
102
:
2273
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2276
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published ahead of print
February 4, 2005
,
doi:10.1073/pnas.0409336102
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2263
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Physical Sciences - Applied Physical Sciences
:
Idan Tuval
,
Luis Cisneros
,
Christopher Dombrowski
,
Charles W. Wolgemuth
,
John O. Kessler
,
and
Raymond E. Goldstein
Bacterial swimming and oxygen transport near contact lines
PNAS
2005
102
:
2277
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2282
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0406724102
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Physical Sciences - Applied Physical Sciences - Biological Sciences - Microbiology
:
John R. Spear
,
Jeffrey J. Walker
,
Thomas M. McCollom
,
and
Norman R. Pace
From the Cover: Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem
PNAS
2005
102
:
2555
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2560
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published ahead of print
January 25, 2005
,
doi:10.1073/pnas.0409574102
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3889
in issue 11 of volume 102
Chemistry
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Physical Sciences - Chemistry
:
Hairong Ma
and
Martin Gruebele
Kinetics are probe-dependent during downhill folding of an engineered λ 6–85 protein
PNAS
2005
102
:
2283
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2287
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0409270102
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Physical Sciences - Chemistry
:
Tina M. Hunter
,
Iain W. McNae
,
Xiangyang Liang
,
Juraj Bella
,
Simon Parsons
,
Malcolm D. Walkinshaw
,
and
Peter J. Sadler
Protein recognition of macrocycles: Binding of anti-HIV metallocyclams to lysozyme
PNAS
2005
102
:
2288
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2292
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published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0407595102
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Physical Sciences - Chemistry - Biological Sciences - Biochemistry
:
Michael Samoilov
,
Sergey Plyasunov
,
and
Adam P. Arkin
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
PNAS
2005
102
:
2310
-
2315
;
published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0406841102
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Computer Sciences
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Physical Sciences - Computer Sciences - Biological Sciences - Genetics
:
Stefan Washietl
,
Ivo L. Hofacker
,
and
Peter F. Stadler
From the Cover: Fast and reliable prediction of noncoding RNAs
PNAS
2005
102
:
2454
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2459
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published ahead of print
January 21, 2005
,
doi:10.1073/pnas.0409169102
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2269
in issue 7 of volume 102
Engineering
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Physical Sciences - Engineering - Biological Sciences - Neuroscience
:
Fan-Gang Zeng
,
Kaibao Nie
,
Ginger S. Stickney
,
Ying-Yee Kong
,
Michael Vongphoe
,
Ashish Bhargave
,
Chaogang Wei
,
and
Keli Cao
Speech recognition with amplitude and frequency modulations
PNAS
2005
102
:
2293
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2298
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published ahead of print
January 27, 2005
,
doi:10.1073/pnas.0406460102
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Physics
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Physical Sciences - Physics
:
Chaoming Song
,
Ping Wang
,
and
Hernán A. Makse
Experimental measurement of an effective temperature for jammed granular materials
PNAS
2005
102
:
2299
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2304
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published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0409911102
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Social Sciences
Anthropology
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Social Sciences - Anthropology
:
Wendy Sandler
,
Irit Meir
,
Carol Padden
,
and
Mark Aronoff
From the Cover: The emergence of grammar: Systematic structure in a new language
PNAS
2005
102
:
2661
-
2665
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0405448102
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2271
in issue 7 of volume 102
Social Sciences
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Social Sciences - Social Sciences
:
Hannelore Brandt
and
Karl Sigmund
Indirect reciprocity, image scoring, and moral hazard
PNAS
2005
102
:
2666
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2670
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published ahead of print
February 4, 2005
,
doi:10.1073/pnas.0407370102
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Biological Sciences
Biochemistry
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Biological Sciences - Biochemistry
:
Ramon K. Tabtiang
,
Brent O. Cezairliyan
,
Robert A. Grant
,
Jesse C. Cochrane
,
and
Robert T. Sauer
Consolidating critical binding determinants by noncyclic rearrangement of protein secondary structure
PNAS
2005
102
:
2305
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2309
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published ahead of print
February 2, 2005
,
doi:10.1073/pnas.0409562102
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Physical Sciences - Chemistry - Biological Sciences - Biochemistry
:
Michael Samoilov
,
Sergey Plyasunov
,
and
Adam P. Arkin
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
PNAS
2005
102
:
2310
-
2315
;
published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0406841102
Abstract
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Supporting Information
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Biological Sciences - Biochemistry
:
Thomas R. Sundermeier
,
Daniel P. Dulebohn
,
Hye Jin Cho
,
and
A. Wali Karzai
A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation
PNAS
2005
102
:
2316
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2321
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0409694102
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Biological Sciences - Biochemistry
:
Hammou Oubrahim
,
Jun Wang
,
Earl R. Stadtman
,
and
P. Boon Chock
Molecular cloning and characterization of murine caspase-12 gene promoter
PNAS
2005
102
:
2322
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2327
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published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0409874102
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Biological Sciences - Biochemistry
:
Sandra E. Nicholson
,
Donald Metcalf
,
Naomi S. Sprigg
,
Ruth Columbus
,
Francesca Walker
,
Anabel Silva
,
Dale Cary
,
Tracy A. Willson
,
Jian-Guo Zhang
,
Douglas J. Hilton
,
Warren S. Alexander
,
and
Nicos A. Nicola
Suppressor of cytokine signaling (SOCS)-5 is a potential negative regulator of epidermal growth factor signaling
PNAS
2005
102
:
2328
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2333
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published ahead of print
February 3, 2005
,
doi:10.1073/pnas.0409675102
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Biological Sciences - Biochemistry
:
Gali Prag
,
Sangho Lee
,
Rafael Mattera
,
Cecilia N. Arighi
,
Bridgette M. Beach
,
Juan S. Bonifacino
,
and
James H. Hurley
Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, γ-ear-containing, ADP-ribosylation-factor-binding proteins
PNAS
2005
102
:
2334
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2339
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published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0500118102
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Biological Sciences - Biochemistry
:
Francisco J. Schopfer
,
Yiming Lin
,
Paul R. S. Baker
,
Taixing Cui
,
Minerva Garcia-Barrio
,
Jifeng Zhang
,
Kai Chen
,
Yuqing E. Chen
,
and
Bruce A. Freeman
Nitrolinoleic acid: An endogenous peroxisome proliferator-activated receptor γ ligand
PNAS
2005
102
:
2340
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2345
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published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0408384102
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Biological Sciences - Biochemistry
:
Aseem Z. Ansari
,
Anuja Ogirala
,
and
Mark Ptashne
Transcriptional activating regions target attached substrates to a cyclin-dependent kinase
PNAS
2005
102
:
2346
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2349
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published ahead of print
February 1, 2005
,
doi:10.1073/pnas.0409671102
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Biological Sciences - Biochemistry
:
Jeonghee Cho
and
Philip N. Tsichlis
Phosphorylation at Thr-290 regulates Tpl2 binding to NF-κB1/p105 and Tpl2 activation and degradation by lipopolysaccharide
PNAS
2005
102
:
2350
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2355
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0409856102
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Biological Sciences - Biochemistry
:
Meihong Chen
,
Lishu Zhang
,
Hong-Yan Zhang
,
Xiahui Xiong
,
Bo Wang
,
Quan Du
,
Bing Lu
,
Claes Wahlestedt
,
and
Zicai Liang
A universal plasmid library encoding all permutations of small interfering RNA
PNAS
2005
102
:
2356
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2361
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published ahead of print
February 4, 2005
,
doi:10.1073/pnas.0401549101
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Biophysics
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Biological Sciences - Biophysics
:
Adam Liwo
,
Mey Khalili
,
and
Harold A. Scheraga
Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains
PNAS
2005
102
:
2362
-
2367
;
published ahead of print
January 26, 2005
,
doi:10.1073/pnas.0408885102
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2265
in issue 7 of volume 102
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Biological Sciences - Biophysics
:
Ophir Flomenbom
,
Kelly Velonia
,
Davey Loos
,
Sadahiro Masuo
,
Mircea Cotlet
,
Yves Engelborghs
,
Johan Hofkens
,
Alan E. Rowan
,
Roeland J. M. Nolte
,
Mark Van der Auweraer
,
Frans C. de Schryver
,
and
Joseph Klafter
Stretched exponential decay and correlations in the catalytic activity of fluctuating single lipase molecules
PNAS
2005
102
:
2368
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2372
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published ahead of print
February 4, 2005
,
doi:10.1073/pnas.0409039102
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Biological Sciences - Biophysics
:
Yaakov Levy
,
Samuel S. Cho
,
Tongye Shen
,
José N. Onuchic
,
and
Peter G. Wolynes
Symmetry and frustration in protein energy landscapes: A near degeneracy resolves the Rop dimer-folding mystery
PNAS
2005
102
:
2373
-
2378
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published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0409572102
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Biological Sciences - Biophysics
:
Jens Bredenbeck
,
Jan Helbing
,
Janet R. Kumita
,
G. Andrew Woolley
,
and
Peter Hamm
α-Helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy
PNAS
2005
102
:
2379
-
2384
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0406948102
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Biological Sciences - Biophysics
:
Krishnananda Chattopadhyay
,
Elliot L. Elson
,
and
Carl Frieden
The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods
PNAS
2005
102
:
2385
-
2389
;
published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0500127102
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Biological Sciences - Biophysics
:
Olivia du Roure
,
Alexandre Saez
,
Axel Buguin
,
Robert H. Austin
,
Philippe Chavrier
,
Pascal Siberzan
,
and
Benoit Ladoux
Force mapping in epithelial cell migration
PNAS
2005
102
:
2390
-
2395
;
published ahead of print
February 4, 2005
,
doi:10.1073/pnas.0408482102
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Cell Biology
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Biological Sciences - Cell Biology
:
Ralf Kittler
,
Laurence Pelletier
,
Chunling Ma
,
Ina Poser
,
Steffi Fischer
,
Anthony A. Hyman
,
and
Frank Buchholz
RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells
PNAS
2005
102
:
2396
-
2401
;
published ahead of print
February 3, 2005
,
doi:10.1073/pnas.0409861102
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Biological Sciences - Cell Biology
:
M. Estela Campanella
,
Haiyan Chu
,
and
Philip S. Low
Assembly and regulation of a glycolytic enzyme complex on the human erythrocyte membrane
PNAS
2005
102
:
2402
-
2407
;
published ahead of print
February 8, 2005
,
doi:10.1073/pnas.0409741102
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Biological Sciences - Cell Biology
:
James R. Stringer
,
Jon S. Larson
,
Jared M. Fischer
,
Mario Medvedovic
,
Megan N. Hersh
,
Gregory P. Boivin
,
and
Saundra L. Stringer
Modeling variation in tumors in vivo
PNAS
2005
102
:
2408
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2413
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published ahead of print
February 3, 2005
,
doi:10.1073/pnas.0401340102
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Developmental Biology
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Biological Sciences - Developmental Biology
:
Yasuhiko Kawakami
,
Masanao Tsuda
,
Shigeru Takahashi
,
Noboru Taniguchi
,
Concepción Rodríguez Esteban
,
Michihisa Zemmyo
,
Takayuki Furumatsu
,
Martin Lotz
,
Juan Carlos Izpisúa Belmonte
,
and
Hiroshi Asahara
Transcriptional coactivator PGC-1α regulates chondrogenesis via association with Sox9
PNAS
2005
102
:
2414
-
2419
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0407510102
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Biological Sciences - Developmental Biology
:
Haiyan Lei
,
Hailong Wang
,
Aster H. Juan
,
and
Frank H. Ruddle
The identification of Hoxc8 target genes
PNAS
2005
102
:
2420
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2424
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published ahead of print
February 7, 2005
,
doi:10.1073/pnas.0409700102
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Ecology
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Biological Sciences - Ecology
:
Peter M. Narins
,
Daniela S. Grabul
,
Kiran K. Soma
,
Philippe Gaucher
,
and
Walter Hödl
From the Cover: Cross-modal integration in a dart-poison frog
PNAS
2005
102
:
2425
-
2429
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published ahead of print
January 26, 2005
,
doi:10.1073/pnas.0406407102
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2267
in issue 7 of volume 102
Evolution
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Biological Sciences - Evolution
:
Huai-Dong Song
,
Chang-Chun Tu
,
Guo-Wei Zhang
,
Sheng-Yue Wang
,
Kui Zheng
,
Lian-Cheng Lei
,
Qiu-Xia Chen
,
Yu-Wei Gao
,
Hui-Qiong Zhou
,
Hua Xiang
,
Hua-Jun Zheng
,
Shur-Wern Wang Chern
,
Feng Cheng
,
Chun-Ming Pan
,
Hua Xuan
,
Sai-Juan Chen
,
Hui-Ming Luo
,
Duan-Hua Zhou
,
Yu-Fei Liu
,
Jian-Feng He
,
Peng-Zhe Qin
,
Ling-Hui Li
,
Yu-Qi Ren
,
Wen-Jia Liang
,
Ye-Dong Yu
,
Larry Anderson
,
Ming Wang
,
Rui-Heng Xu
,
Xin-Wei Wu
,
Huan-Ying Zheng
,
Jin-Ding Chen
,
Guodong Liang
,
Yang Gao
,
Ming Liao
,
Ling Fang
,
Li-Yun Jiang
,
Hui Li
,
Fang Chen
,
Biao Di
,
Li-Juan He
,
Jin-Yan Lin
,
Suxiang Tong
,
Xiangang Kong
,
Lin Du
,
Pei Hao
,
Hua Tang
,
Andrea Bernini
,
Xiao-Jing Yu
,
Ottavia Spiga
,
Zong-Ming Guo
,
Hai-Yan Pan
,
Wei-Zhong He
,
Jean-Claude Manuguerra
,
Arnaud Fontanet
,
Antoine Danchin
,
Neri Niccolai
,
Yi-Xue Li
,
Chung-I Wu
,
and
Guo-Ping Zhao
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human
PNAS
2005
102
:
2430
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2435
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published ahead of print
February 4, 2005
,