PNAS — Table of Contents — September 20, 2005, 102 (38)

Agricultural Sciences

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Biological Sciences - Agricultural Sciences:
- Frank Waller,
- Beate Achatz,
- Helmut Baltruschat,
- József Fodor,
- Katja Becker,
- Marina Fischer,
- Tobias Heier,
- Ralph Hückelhoven,
- Christina Neumann,
- Diter von Wettstein,
- Philipp Franken,
- and Karl-Heinz Kogel
The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield
PNAS 2005 102:13386-13391; published ahead of print September 8, 2005, doi:10.1073/pnas.0504423102

Biochemistry

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Biological Sciences - Biochemistry:
- Alexei V. Kazantsev,
- Angelika A. Krivenko,
- Daniel J. Harrington,
- Stephen R. Holbrook,
- Paul D. Adams,
- and Norman R. Pace
Crystal structure of a bacterial ribonuclease P RNA
PNAS 2005 102:13392-13397; published ahead of print September 12, 2005, doi:10.1073/pnas.0506662102
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Biological Sciences - Biochemistry:
- H. Alexander Ebhardt,
- Emily P. Thi,
- Ming-Bo Wang,
- and Peter J. Unrau
Extensive 3′ modification of plant small RNAs is modulated by helper component-proteinase expression
PNAS 2005 102:13398-13403; published ahead of print September 12, 2005, doi:10.1073/pnas.0506597102
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Biological Sciences - Biochemistry:
- Toshiyuki Nakamura,
- Norihito Shibata,
- Takako Nishimoto-Shibata,
- Dongdong Feng,
- Mamoru Ikemoto,
- Kiyoto Motojima,
- Naoyuki Iso-o,
- Kazuhisa Tsukamoto,
- Masafumi Tsujimoto,
- and Hiroyuki Arai
Regulation of SR-BI protein levels by phosphorylation of its associated protein, PDZK1
PNAS 2005 102:13404-13409; published ahead of print September 8, 2005, doi:10.1073/pnas.0506679102
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Biological Sciences - Biochemistry:
- Shengbing Huang,
- Hui Zhou,
- David Katzmann,
- Mark Hochstrasser,
- Elena Atanasova,
- and Zhiguo Zhang
Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing
PNAS 2005 102:13410-13415; published ahead of print September 12, 2005, doi:10.1073/pnas.0506176102
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Biological Sciences - Biochemistry:
- Haiyu Zhang,
- Narayan N. Rao,
- Toshikazu Shiba,
- and Arthur Kornberg
Inorganic polyphosphate in the social life of Myxococcus xanthus : Motility, development, and predation
PNAS 2005 102:13416-13420; published ahead of print September 8, 2005, doi:10.1073/pnas.0506520102
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Biological Sciences - Biochemistry:
- Patrick Hundsdoerfer,
- Christian Thoma,
- and Matthias W. Hentze
Eukaryotic translation initiation factor 4GI and p97 promote cellular internal ribosome entry sequence-driven translation
PNAS 2005 102:13421-13426; published ahead of print September 7, 2005, doi:10.1073/pnas.0506536102

Biophysics

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Biological Sciences - Biophysics:
- Anders Irbäck,
- Simon Mitternacht,
- and Sandipan Mohanty
Dissecting the mechanical unfolding of ubiquitin
PNAS 2005 102:13427-13432; published ahead of print September 7, 2005, doi:10.1073/pnas.0501581102
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Biological Sciences - Biophysics:
- Roger S. Armen,
- Brady M. Bernard,
- Ryan Day,
- Darwin O. V. Alonso,
- and Valerie Daggett
Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases
PNAS 2005 102:13433-13438; published ahead of print September 12, 2005, doi:10.1073/pnas.0502068102
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Biological Sciences - Biophysics:
- Ilya Shmulevich,
- Stuart A. Kauffman,
- and Maximino Aldana
Eukaryotic cells are dynamically ordered or critical but not chaotic
PNAS 2005 102:13439-13444; published ahead of print September 9, 2005, doi:10.1073/pnas.0506771102
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Biological Sciences - Biophysics:
- Ryan Day
- and Valerie Daggett
Ensemble versus single-molecule protein unfolding
PNAS 2005 102:13445-13450; published ahead of print September 9, 2005, doi:10.1073/pnas.0501773102
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Biological Sciences - Biophysics:
- Stephen M. Contakes,
- Gregory A. Juda,
- David B. Langley,
- Nicholas W. Halpern-Manners,
- Anthony P. Duff,
- Alexander R. Dunn,
- Harry B. Gray,
- David M. Dooley,
- J. Mitchell Guss,
- and Hans C. Freeman
Reversible inhibition of copper amine oxidase activity by channel-blocking ruthenium(II) and rhenium(I) molecular wires
PNAS 2005 102:13451-13456; published ahead of print September 12, 2005, doi:10.1073/pnas.0506336102

Cell Biology

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Biological Sciences - Cell Biology:
- Olav M. Andersen,
- Juliane Reiche,
- Vanessa Schmidt,
- Michael Gotthardt,
- Robert Spoelgen,
- Joachim Behlke,
- Christine A. F. von Arnim,
- Tilman Breiderhoff,
- Pernille Jansen,
- Xin Wu,
- Kelly R. Bales,
- Roberto Cappai,
- Colin L. Masters,
- Jørgen Gliemann,
- Elliott J. Mufson,
- Bradley T. Hyman,
- Steven M. Paul,
- Anders Nykjær,
- and Thomas E. Willnow
Neuronal sorting protein-related receptor sorLA/LR11 regulates processing of the amyloid precursor protein
PNAS 2005 102:13461-13466; published ahead of print September 7, 2005, doi:10.1073/pnas.0503689102
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Biological Sciences - Cell Biology:
- Hiroyuki Yano,
- Miki Yamamoto-Hino,
- Masato Abe,
- Reiko Kuwahara,
- Shuka Haraguchi,
- Isamu Kusaka,
- Wakae Awano,
- Akiko Kinoshita-Toyoda,
- Hidenao Toyoda,
- and Satoshi Goto
Distinct functional units of the Golgi complex in Drosophila cells
PNAS 2005 102:13467-13472; published ahead of print September 8, 2005, doi:10.1073/pnas.0506681102
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Biological Sciences - Cell Biology:
- Sara O. Dean,
- Stephen L. Rogers,
- Nico Stuurman,
- Ronald D. Vale,
- and James A. Spudich
Distinct pathways control recruitment and maintenance of myosin II at the cleavage furrow during cytokinesis
PNAS 2005 102:13473-13478; published ahead of print September 8, 2005, doi:10.1073/pnas.0506810102
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Biological Sciences - Cell Biology:
- Joseph H. McCarty,
- Aaron A. Cook,
- and Richard O. Hynes
An interaction between αvβ8 integrin and Band 4.1B via a highly conserved region of the Band 4.1 C-terminal domain
PNAS 2005 102:13479-13483; published ahead of print September 12, 2005, doi:10.1073/pnas.0506068102
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Biological Sciences - Cell Biology:
- Lei Wang,
- Linda Yang,
- Kevin Burns,
- Chia-Yi Kuan,
- and Yi Zheng
Cdc42GAP regulates c-Jun N-terminal kinase (JNK)-mediated apoptosis and cell number during mammalian perinatal growth
PNAS 2005 102:13484-13489; published ahead of print September 12, 2005, doi:10.1073/pnas.0504420102

Developmental Biology

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Biological Sciences - Developmental Biology:
- Xuan Chi,
- Pradeep K. Chatterjee,
- Willie Wilson, III,
- Shu-Xing Zhang,
- Franco J. DeMayo,
- and Robert J. Schwartz
Complex cardiac Nkx2-5 gene expression activated by noggin-sensitive enhancers followed by chamber-specific modules
PNAS 2005 102:13490-13495; published ahead of print September 6, 2005, doi:10.1073/pnas.0504295102
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Biological Sciences - Developmental Biology:
- Marc R. Van Gilst,
- Haralambos Hadjivassiliou,
- and Keith R. Yamamoto
From the Cover: A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49
PNAS 2005 102:13496-13501; published ahead of print September 12, 2005, doi:10.1073/pnas.0506234102
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Biological Sciences - Developmental Biology:
- Yoshiaki Kubota,
- Yuichi Oike,
- Shinya Satoh,
- Yoko Tabata,
- Yuichi Niikura,
- Tohru Morisada,
- Masaki Akao,
- Takashi Urano,
- Yasuhiro Ito,
- Takeshi Miyamoto,
- Norihiro Nagai,
- Gou Young Koh,
- Sumiko Watanabe,
- and Toshio Suda
Cooperative interaction of Angiopoietin-like proteins 1 and 2 in zebrafish vascular development
PNAS 2005 102:13502-13507; published ahead of print September 8, 2005, doi:10.1073/pnas.0501902102

Ecology

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Biological Sciences - Ecology:
- Marta L. del Campo,
- Scott R. Smedley,
- and Thomas Eisner
Reproductive benefits derived from defensive plant alkaloid possession in an arctiid moth ( Utetheisa ornatrix )
PNAS 2005 102:13508-13512; published ahead of print September 8, 2005, doi:10.1073/pnas.0505725102
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Biological Sciences - Ecology:
- Mark A. Steele
- and Graham E. Forrester
Small-scale field experiments accurately scale up to predict density dependence in reef fish populations at large scales
PNAS 2005 102:13513-13516; published ahead of print September 6, 2005, doi:10.1073/pnas.0504306102
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Biological Sciences - Ecology:
- Sujay S. Kaushal,
- Peter M. Groffman,
- Gene E. Likens,
- Kenneth T. Belt,
- William P. Stack,
- Victoria R. Kelly,
- Lawrence E. Band,
- and Gary T. Fisher
From the Cover: Increased salinization of fresh water in the northeastern United States
PNAS 2005 102:13517-13520; published ahead of print September 12, 2005, doi:10.1073/pnas.0506414102
- See commentary article on page 14487 in issue 41 of volume 102

Environmental Sciences

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Biological Sciences - Environmental Sciences:
- Scott J. Goetz,
- Andrew G. Bunn,
- Gregory J. Fiske,
- and R. A. Houghton
Satellite-observed photosynthetic trends across boreal North America associated with climate and fire disturbance
PNAS 2005 102:13521-13525; published ahead of print September 7, 2005, doi:10.1073/pnas.0506179102

Evolution

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From the Academy - Biological Sciences - Evolution:
- Yi Xing
- and Christopher Lee
From the Academy: Colloquium Paper: Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences
PNAS 2005 102:13526-13531; published ahead of print September 12, 2005, doi:10.1073/pnas.0501213102
- See commentary article on page 13355 in issue 38 of volume 102

Genetics

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Biological Sciences - Genetics:
- Huai-Kuang Tsai,
- Henry Horng-Shing Lu,
- and Wen-Hsiung Li
Statistical methods for identifying yeast cell cycle transcription factors
PNAS 2005 102:13532-13537; published ahead of print September 12, 2005, doi:10.1073/pnas.0505874102
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Biological Sciences - Genetics:
- S. Kozmin,
- G. Slezak,
- A. Reynaud-Angelin,
- C. Elie,
- Y. de Rycke,
- S. Boiteux,
- and E. Sage
UVA radiation is highly mutagenic in cells that are unable to repair 7,8-dihydro-8-oxoguanine in Saccharomyces cerevisiae
PNAS 2005 102:13538-13543; published ahead of print September 12, 2005, doi:10.1073/pnas.0504497102
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Physical Sciences - Statistics - Biological Sciences - Genetics:
- Lu Tian,
- Steven A. Greenberg,
- Sek Won Kong,
- Josiah Altschuler,
- Isaac S. Kohane,
- and Peter J. Park
Discovering statistically significant pathways in expression profiling studies
PNAS 2005 102:13544-13549; published ahead of print September 8, 2005, doi:10.1073/pnas.0506577102
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Biological Sciences - Genetics:
- Lance D. Miller,
- Johanna Smeds,
- Joshy George,
- Vinsensius B. Vega,
- Liza Vergara,
- Alexander Ploner,
- Yudi Pawitan,
- Per Hall,
- Sigrid Klaar,
- Edison T. Liu,
- and Jonas Bergh
From the Cover: An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
PNAS 2005 102:13550-13555; published ahead of print September 2, 2005, doi:10.1073/pnas.0506230102

Immunology

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Physical Sciences - Chemistry - Biological Sciences - Immunology:
- Daniel A. Calarese,
- Hing-Ken Lee,
- Cheng-Yuan Huang,
- Michael D. Best,
- Rena D. Astronomo,
- Robyn L. Stanfield,
- Hermann Katinger,
- Dennis R. Burton,
- Chi-Huey Wong,
- and Ian A. Wilson
Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12
PNAS 2005 102:13372

Table of Contents

FROM THE COVER

Bugging the intestinal response to radiation

The LIGHT and DARC sides of herpesvirus entry mediator

Eusociality: Origin and consequences

This Week in PNAS

From the Academy: Colloquium Perspective: Statistical signals in bioinformatics

From the Academy: Colloquium Paper: Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences

Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12

From the Cover: Probing the structure of a rotaxane with two-dimensional infrared spectroscopy

Defined DNA/nanoparticle conjugates

Discovering statistically significant pathways in expression profiling studies

The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield

Crystal structure of a bacterial ribonuclease P RNA

Extensive 3′ modification of plant small RNAs is modulated by helper component-proteinase expression

Regulation of SR-BI protein levels by phosphorylation of its associated protein, PDZK1

Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing

Inorganic polyphosphate in the social life of Myxococcus xanthus : Motility, development, and predation

Eukaryotic translation initiation factor 4GI and p97 promote cellular internal ribosome entry sequence-driven translation

Dissecting the mechanical unfolding of ubiquitin

Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases

Eukaryotic cells are dynamically ordered or critical but not chaotic

Ensemble versus single-molecule protein unfolding

Reversible inhibition of copper amine oxidase activity by channel-blocking ruthenium(II) and rhenium(I) molecular wires

Neuronal sorting protein-related receptor sorLA/LR11 regulates processing of the amyloid precursor protein

Distinct functional units of the Golgi complex in Drosophila cells

Distinct pathways control recruitment and maintenance of myosin II at the cleavage furrow during cytokinesis

An interaction between αvβ8 integrin and Band 4.1B via a highly conserved region of the Band 4.1 C-terminal domain

Cdc42GAP regulates c-Jun N-terminal kinase (JNK)-mediated apoptosis and cell number during mammalian perinatal growth

Complex cardiac Nkx2-5 gene expression activated by noggin-sensitive enhancers followed by chamber-specific modules

From the Cover: A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49

Cooperative interaction of Angiopoietin-like proteins 1 and 2 in zebrafish vascular development

Reproductive benefits derived from defensive plant alkaloid possession in an arctiid moth ( Utetheisa ornatrix )

Small-scale field experiments accurately scale up to predict density dependence in reef fish populations at large scales

From the Cover: Increased salinization of fresh water in the northeastern United States

Satellite-observed photosynthetic trends across boreal North America associated with climate and fire disturbance

From the Academy: Colloquium Paper: Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences

Statistical methods for identifying yeast cell cycle transcription factors

UVA radiation is highly mutagenic in cells that are unable to repair 7,8-dihydro-8-oxoguanine in Saccharomyces cerevisiae

Discovering statistically significant pathways in expression profiling studies

From the Cover: An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival

Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12