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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
March 8, 2005; 102 (10)
Index By Author
Cover Photo
Masthead (PDF)
FROM THE COVER
Redox activation of DNA repair proteins
Mapping protein structure space
Correlating breast cancer and wound healing
Gene duplication confers infection resistance
Cell response to perinatal nicotine exposure
Commentaries
Commentary
:
Kinya Nomura
and
Sheng Yang He
Powerful screens for bacterial virulence proteins
PNAS
2005
102
:
3527
-
3528
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500724102
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See companion article on page
2549
in issue 7 of volume 102
Commentary
:
Carla B. Green
Time for chronotherapy? Clock genes dictate sensitivity to cyclophosphamide
PNAS
2005
102
:
3529
-
3530
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500552102
Extract
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See companion article on page
3407
in issue 9 of volume 102
Commentary
:
Edison T. Liu
Mechanism-derived gene expression signatures and predictive biomarkers in clinical oncology
PNAS
2005
102
:
3531
-
3532
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500244102
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See companion article on page
3738
in issue 10 of volume 102
In This Issue
In This Issue
:
This Week in PNAS
PNAS
2005
102
:
3525
-
3526
;
doi:10.1073/iti1005102
Full Text
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Long-Range Electron Transfer Special Feature
Introduction
Long-Range Electron Transfer Special Feature - Introduction
:
Harry B. Gray
and
Jack Halpern
Long-Range Electron Transfer Special Feature: Distant charge transport
PNAS
2005
102
:
3533
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0501035102
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Perspective
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Long-Range Electron Transfer Special Feature - Perspective
:
Harry B. Gray
and
Jay R. Winkler
Long-Range Electron Transfer Special Feature: Long-range electron transfer
PNAS
2005
102
:
3534
-
3539
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408029102
Abstract
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Physical Sciences
Chemistry
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Physical Sciences - Chemistry - Long-Range Electron Transfer Special Feature
:
Randall H. Goldsmith
,
Louise E. Sinks
,
Richard F. Kelley
,
Laura J. Betzen
,
Wenhao Liu
,
Emily A. Weiss
,
Mark A. Ratner
,
and
Michael R. Wasielewski
Long-Range Electron Transfer Special Feature: Wire-like charge transport at near constant bridge energy through fluorene oligomers
PNAS
2005
102
:
3540
-
3545
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408940102
Abstract
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Supporting Information
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Physical Sciences - Chemistry - Biological Sciences - Biochemistry - Long-Range Electron Transfer Special Feature
:
Eylon Yavin
,
Amie K. Boal
,
Eric D. A. Stemp
,
Elizabeth M. Boon
,
Alison L. Livingston
,
Valerie L. O'Shea
,
Sheila S. David
,
and
Jacqueline K. Barton
From the Cover: Long-Range Electron Transfer Special Feature: Protein–DNA charge transport: Redox activation of a DNA repair protein by guanine radical
PNAS
2005
102
:
3546
-
3551
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409410102
Abstract
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Physical Sciences - Chemistry - Biological Sciences - Biophysics - Long-Range Electron Transfer Special Feature
:
Spiros S. Skourtis
,
Ilya A. Balabin
,
Tsutomu Kawatsu
,
and
David N. Beratan
Long-Range Electron Transfer Special Feature: Protein dynamics and electron transfer: Electronic decoherence and non-Condon effects
PNAS
2005
102
:
3552
-
3557
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409047102
Abstract
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Physical Sciences - Chemistry - Biological Sciences - Biophysics - Long-Range Electron Transfer Special Feature
:
Osamu Miyashita
,
Melvin Y. Okamura
,
and
José N. Onuchic
Long-Range Electron Transfer Special Feature: Interprotein electron transfer from cytochrome c 2 to photosynthetic reaction center: Tunneling across an aqueous interface
PNAS
2005
102
:
3558
-
3563
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409600102
Abstract
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Physical Sciences - Chemistry - Biological Sciences - Biophysics - Long-Range Electron Transfer Special Feature
:
Brian M. Hoffman
,
Laura M. Celis
,
Deborah A. Cull
,
Ami D. Patel
,
Jennifer L. Seifert
,
Korin E. Wheeler
,
Jingyun Wang
,
Jiang Yao
,
Igor V. Kurnikov
,
and
Judith M. Nocek
Long-Range Electron Transfer Special Feature: Differential influence of dynamic processes on forward and reverse electron transfer across a protein-protein interface
PNAS
2005
102
:
3564
-
3569
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408767102
Abstract
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Physical Sciences - Chemistry
:
Jing Wu
,
Jian-Xin Ji
,
and
Albert S. C. Chan
A remarkably effective copper(II)-dipyridylphosphine catalyst system for the asymmetric hydrosilylation of ketones in air
PNAS
2005
102
:
3570
-
3575
;
published ahead of print
February 22, 2005
,
doi:10.1073/pnas.0409043102
Abstract
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Physical Sciences - Chemistry - Biological Sciences - Biochemistry
:
Charles Kung
,
Denise M. Kenski
,
Scott H. Dickerson
,
Russell W. Howson
,
Lee F. Kuyper
,
Hiten D. Madhani
,
and
Kevan M. Shokat
Chemical genomic profiling to identify intracellular targets of a multiplex kinase inhibitor
PNAS
2005
102
:
3587
-
3592
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0407170102
Abstract
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Supporting Information
Biological Sciences
Anthropology
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Biological Sciences - Anthropology
:
Anne H. Weaver
Reciprocal evolution of the cerebellum and neocortex in fossil humans
PNAS
2005
102
:
3576
-
3580
;
published ahead of print
February 24, 2005
,
doi:10.1073/pnas.0500692102
Abstract
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Applied Biological Sciences
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Biological Sciences - Applied Biological Sciences
:
Sara Hooshangi
,
Stephan Thiberge
,
and
Ron Weiss
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
PNAS
2005
102
:
3581
-
3586
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408507102
Abstract
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Supporting Information
Biochemistry
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biochemistry - Long-Range Electron Transfer Special Feature
:
Eylon Yavin
,
Amie K. Boal
,
Eric D. A. Stemp
,
Elizabeth M. Boon
,
Alison L. Livingston
,
Valerie L. O'Shea
,
Sheila S. David
,
and
Jacqueline K. Barton
From the Cover: Long-Range Electron Transfer Special Feature: Protein–DNA charge transport: Redox activation of a DNA repair protein by guanine radical
PNAS
2005
102
:
3546
-
3551
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409410102
Abstract
Full Text
Full Text (PDF)
Figures Only
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biochemistry
:
Charles Kung
,
Denise M. Kenski
,
Scott H. Dickerson
,
Russell W. Howson
,
Lee F. Kuyper
,
Hiten D. Madhani
,
and
Kevan M. Shokat
Chemical genomic profiling to identify intracellular targets of a multiplex kinase inhibitor
PNAS
2005
102
:
3587
-
3592
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0407170102
Abstract
Full Text
Full Text (PDF)
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Supporting Information
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Biological Sciences - Biochemistry
:
Eric H. Kong
,
Nina Heldring
,
Jan-Åke Gustafsson
,
Eckardt Treuter
,
Roderick E. Hubbard
,
and
Ashley C. W. Pike
Delineation of a unique protein–protein interaction site on the surface of the estrogen receptor
PNAS
2005
102
:
3593
-
3598
;
published ahead of print
February 23, 2005
,
doi:10.1073/pnas.0407189102
Abstract
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Supporting Information
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Biological Sciences - Biochemistry
:
Lu Shan
,
Irimpan I. Mathews
,
and
Chaitan Khosla
Structural and mechanistic analysis of two prolyl endopeptidases: Role of interdomain dynamics in catalysis and specificity
PNAS
2005
102
:
3599
-
3604
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408286102
Abstract
Full Text
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Supporting Figures
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Biological Sciences - Biochemistry
:
Eric Allemand
,
Sònia Guil
,
Michael Myers
,
Jorge Moscat
,
Javier F. Cáceres
,
and
Adrian R. Krainer
Regulation of heterogenous nuclear ribonucleoprotein A1 transport by phosphorylation in cells stressed by osmotic shock
PNAS
2005
102
:
3605
-
3610
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409889102
Abstract
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Biological Sciences - Biochemistry
:
Young-Ho Lee
,
Scott A. Coonrod
,
W. Lee Kraus
,
Mary Anne Jelinek
,
and
Michael R. Stallcup
Regulation of coactivator complex assembly and function by protein arginine methylation and demethylimination
PNAS
2005
102
:
3611
-
3616
;
published ahead of print
February 24, 2005
,
doi:10.1073/pnas.0407159102
Abstract
Full Text
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Supporting Information
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Biological Sciences - Biochemistry
:
Sreenivas Kanugula
,
Gary T. Pauly
,
Robert C. Moschel
,
and
Anthony E. Pegg
A bifunctional DNA repair protein from Ferroplasma acidarmanus exhibits O 6 -alkylguanine-DNA alkyltransferase and endonuclease V activities
PNAS
2005
102
:
3617
-
3622
;
published ahead of print
February 24, 2005
,
doi:10.1073/pnas.0408719102
Abstract
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Biological Sciences - Biochemistry
:
Mona T. Norcum
,
J. Anthony Warrington
,
Michelle M. Spiering
,
Faoud T. Ishmael
,
Michael A. Trakselis
,
and
Stephen J. Benkovic
Architecture of the bacteriophage T4 primosome: Electron microscopy studies of helicase (gp41) and primase (gp61)
PNAS
2005
102
:
3623
-
3626
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500713102
Abstract
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Biological Sciences - Biochemistry
:
Peggy S. Eis
,
Wayne Tam
,
Liping Sun
,
Amy Chadburn
,
Zongdong Li
,
Mario F. Gomez
,
Elsebet Lund
,
and
James E. Dahlberg
Accumulation of miR-155 and BIC RNA in human B cell lymphomas
PNAS
2005
102
:
3627
-
3632
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500613102
Abstract
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Supporting Information
Biophysics
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics - Long-Range Electron Transfer Special Feature
:
Spiros S. Skourtis
,
Ilya A. Balabin
,
Tsutomu Kawatsu
,
and
David N. Beratan
Long-Range Electron Transfer Special Feature: Protein dynamics and electron transfer: Electronic decoherence and non-Condon effects
PNAS
2005
102
:
3552
-
3557
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409047102
Abstract
Full Text
Full Text (PDF)
Figures Only
Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics - Long-Range Electron Transfer Special Feature
:
Osamu Miyashita
,
Melvin Y. Okamura
,
and
José N. Onuchic
Long-Range Electron Transfer Special Feature: Interprotein electron transfer from cytochrome c 2 to photosynthetic reaction center: Tunneling across an aqueous interface
PNAS
2005
102
:
3558
-
3563
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409600102
Abstract
Full Text
Full Text (PDF)
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Select this article
Physical Sciences - Chemistry - Biological Sciences - Biophysics - Long-Range Electron Transfer Special Feature
:
Brian M. Hoffman
,
Laura M. Celis
,
Deborah A. Cull
,
Ami D. Patel
,
Jennifer L. Seifert
,
Korin E. Wheeler
,
Jingyun Wang
,
Jiang Yao
,
Igor V. Kurnikov
,
and
Judith M. Nocek
Long-Range Electron Transfer Special Feature: Differential influence of dynamic processes on forward and reverse electron transfer across a protein-protein interface
PNAS
2005
102
:
3564
-
3569
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408767102
Abstract
Full Text
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Biological Sciences - Biophysics
:
Florian Garczarek
,
Leonid S. Brown
,
Janos K. Lanyi
,
and
Klaus Gerwert
Proton binding within a membrane protein by a protonated water cluster
PNAS
2005
102
:
3633
-
3638
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500421102
Abstract
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Biological Sciences - Biophysics
:
Soumya S. Ray
,
Richard J. Nowak
,
Robert H. Brown, Jr.
,
and
Peter T. Lansbury, Jr.
Small-molecule-mediated stabilization of familial amyotrophic lateral sclerosis-linked superoxide dismutase mutants against unfolding and aggregation
PNAS
2005
102
:
3639
-
3644
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408277102
Abstract
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Biological Sciences - Biophysics
:
T. E. Cloutier
and
J. Widom
DNA twisting flexibility and the formation of sharply looped protein–DNA complexes
PNAS
2005
102
:
3645
-
3650
;
published ahead of print
February 17, 2005
,
doi:10.1073/pnas.0409059102
Abstract
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Biological Sciences - Biophysics
:
Jingtong Hou
,
Se-Ran Jun
,
Chao Zhang
,
and
Sung-Hou Kim
From the Cover: Global mapping of the protein structure space and application in structure-based inference of protein function
PNAS
2005
102
:
3651
-
3656
;
published ahead of print
February 10, 2005
,
doi:10.1073/pnas.0409772102
Abstract
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See commentary article on page
5641
in issue 16 of volume 102
Select this article
Biological Sciences - Biophysics
:
Ilya Belevich
,
Vitaliy B. Borisov
,
Jie Zhang
,
Ke Yang
,
Alexander A. Konstantinov
,
Robert B. Gennis
,
and
Michael I. Verkhovsky
Time-resolved electrometric and optical studies on cytochrome bd suggest a mechanism of electron-proton coupling in the di-heme active site
PNAS
2005
102
:
3657
-
3662
;
published ahead of print
February 22, 2005
,
doi:10.1073/pnas.0405683102
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Biological Sciences - Biophysics
:
J. L. Campos
,
L. Urpí
,
T. Sanmartín
,
C. Gouyette
,
and
J. A. Subirana
DNA coiled coils
PNAS
2005
102
:
3663
-
3666
;
published ahead of print
February 22, 2005
,
doi:10.1073/pnas.0500496102
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Biological Sciences - Biophysics
:
J. L. Hodgkinson
,
C. Peters
,
S. A. Kuznetsov
,
and
W. Steffen
Three-dimensional reconstruction of the dynactin complex by single-particle image analysis
PNAS
2005
102
:
3667
-
3672
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409506102
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Biological Sciences - Biophysics
:
Itamar Borukhov
,
Robijn F. Bruinsma
,
William M. Gelbart
,
and
Andrea J. Liu
Structural polymorphism of the cytoskeleton: A model of linker-assisted filament aggregation
PNAS
2005
102
:
3673
-
3678
;
published ahead of print
February 24, 2005
,
doi:10.1073/pnas.0404140102
Abstract
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Cell Biology
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Biological Sciences - Cell Biology
:
Bing-Hao Luo
,
Christopher V. Carman
,
Junichi Takagi
,
and
Timothy A. Springer
Disrupting integrin transmembrane domain heterodimerization increases ligand binding affinity, not valency or clustering
PNAS
2005
102
:
3679
-
3684
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0409440102
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Biological Sciences - Cell Biology
:
Esther López-Rivera
,
Tania R. Lizarbe
,
Mónica Martínez-Moreno
,
José Miguel López-Novoa
,
Alicia Rodríguez-Barbero
,
José Rodrigo
,
Ana Patricia Fernández
,
Alberto Álvarez-Barrientos
,
Santiago Lamas
,
and
Carlos Zaragoza
Matrix metalloproteinase 13 mediates nitric oxide activation of endothelial cell migration
PNAS
2005
102
:
3685
-
3690
;
published ahead of print
February 22, 2005
,
doi:10.1073/pnas.0408217102
Abstract
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Biological Sciences - Cell Biology
:
Mee Yeon Park
,
Gang Wu
,
Alfredo Gonzalez-Sulser
,
Hervé Vaucheret
,
and
R. Scott Poethig
Nuclear processing and export of microRNAs in Arabidopsis
PNAS
2005
102
:
3691
-
3696
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0405570102
Abstract
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Biological Sciences - Cell Biology
:
Melissa J. Peart
,
Gordon K. Smyth
,
Ryan K. van Laar
,
David D. Bowtell
,
Victoria M. Richon
,
Paul A. Marks
,
Andrew J. Holloway
,
and
Ricky W. Johnstone
Identification and functional significance of genes regulated by structurally different histone deacetylase inhibitors
PNAS
2005
102
:
3697
-
3702
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500369102
Abstract
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Biological Sciences - Cell Biology
:
Viktor Stolc
,
Manoj Pratim Samanta
,
Waraporn Tongprasit
,
and
Wallace F. Marshall
Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes
PNAS
2005
102
:
3703
-
3707
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0408358102
Abstract
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Developmental Biology
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Biological Sciences - Developmental Biology
:
Lorin E. Olson
,
Jie Zhang
,
Havilah Taylor
,
David W. Rose
,
and
Michael G. Rosenfeld
Barx2 functions through distinct corepressor classes to regulate hair follicle remodeling
PNAS
2005
102
:
3708
-
3713
;
published ahead of print
February 22, 2005
,
doi:10.1073/pnas.0500519102
Abstract
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Biological Sciences - Developmental Biology
:
David J. Pearton
,
Ying Yang
,
and
Danielle Dhouailly
Transdifferentiation of corneal epithelium into epidermis occurs by means of a multistep process triggered by dermal developmental signals
PNAS
2005
102
:
3714
-
3719
;
published ahead of print
February 28, 2005
,
doi:10.1073/pnas.0500344102
Abstract
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Biological Sciences - Developmental Biology
: