PNAS — Table of Contents — February 17, 2004, 101 (7)

Commentaries

Commentary:
- Heinrich Roder
Stepwise helix formation and chain compaction during protein folding
PNAS 2004 101:1793-1794; published ahead of print February 9, 2004, doi:10.1073/pnas.0308172101
- See companion article on page 1171 in issue 5 of volume 101
Commentary:
- Ann E. Power
Slow-wave sleep, acetylcholine, and memory consolidation
PNAS 2004 101:1795-1796; published ahead of print February 9, 2004, doi:10.1073/pnas.0400237101
- See companion article on page 2140 in issue 7 of volume 101

Biography

Biography:
- Christen Brownlee
Inaugural Article: Biography of Karl Hess
PNAS 2004 101:1797-1798; published ahead of print February 9, 2004, doi:10.1073/pnas.0400379101
- See commentary article on page 1799 in issue 7 of volume 101

Physical Sciences

Applied Mathematics

Select this article
Physical Sciences - Applied Mathematics:
- E. Cerda,
- L. Mahadevan,
- and J. M. Pasini
The elements of draping
PNAS 2004 101:1806-1810; published ahead of print February 6, 2004, doi:10.1073/pnas.0307160101

Mathematics

Select this article
Physical Sciences - Mathematics:
- Karl Hess
- and Walter Philipp
Inaugural Article: Breakdown of Bell's theorem for certain objective local parameter spaces
PNAS 2004 101:1799-1805; published ahead of print January 22, 2004, doi:10.1073/pnas.0307479100
- See commentary article on page 1797 in issue 7 of volume 101

Physics

Select this article
Physical Sciences - Physics:
- S. R. Qiu,
- A. Wierzbicki,
- C. A. Orme,
- A. M. Cody,
- J. R. Hoyer,
- G. H. Nancollas,
- S. Zepeda,
- and J. J. De Yoreo
From the Cover: Molecular modulation of calcium oxalate crystallization by osteopontin and citrate
PNAS 2004 101:1811-1815; published ahead of print February 6, 2004, doi:10.1073/pnas.0307900100

Biological Sciences

Biochemistry

Select this article
Biological Sciences - Biochemistry:
- Michael D. Feese,
- Taro Tamada,
- Yoichi Kato,
- Yoshitake Maeda,
- Masako Hirose,
- Yasuko Matsukura,
- Hideki Shigematsu,
- Takanori Muto,
- Atsushi Matsumoto,
- Hiroshi Watarai,
- Kinya Ogami,
- Tomoyuki Tahara,
- Takashi Kato,
- Hiroshi Miyazaki,
- and Ryota Kuroki
Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
PNAS 2004 101:1816-1821; published ahead of print February 9, 2004, doi:10.1073/pnas.0308530100
Select this article
Biological Sciences - Biochemistry:
- David Angeli,
- James E. Ferrell, Jr.,
- and Eduardo D. Sontag
Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems
PNAS 2004 101:1822-1827; published ahead of print February 6, 2004, doi:10.1073/pnas.0308265100
Select this article
Biological Sciences - Biochemistry:
- Avram M. Slovic,
- Hidetoshi Kono,
- James D. Lear,
- Jeffery G. Saven,
- and William F. DeGrado
From the Cover: Computational design of water-soluble analogues of the potassium channel KcsA
PNAS 2004 101:1828-1833; published ahead of print February 6, 2004, doi:10.1073/pnas.0306417101
Select this article
Biological Sciences - Biochemistry:
- Nadia Dubé,
- Alan Cheng,
- and Michel L. Tremblay
The role of protein tyrosine phosphatase 1B in Ras signaling
PNAS 2004 101:1834-1839; published ahead of print February 6, 2004, doi:10.1073/pnas.0304242101
Select this article
Biological Sciences - Biochemistry:
- Chaitanya S. Nirodi,
- Brenda C. Crews,
- Kevin R. Kozak,
- Jason D. Morrow,
- and Lawrence J. Marnett
The glyceryl ester of prostaglandin E 2 mobilizes calcium and activates signal transduction in RAW264.7 cells
PNAS 2004 101:1840-1845; published ahead of print February 6, 2004, doi:10.1073/pnas.0303950101
Select this article
Biological Sciences - Biochemistry:
- Michaela Tiemann,
- Zhihua Han,
- Raymond Soccio,
- Jaya Bollineni,
- Sarah Shefer,
- Ephraim Sehayek,
- and Jan L. Breslow
Cholesterol feeding of mice expressing cholesterol 7α-hydroxylase increases bile acid pool size despite decreased enzyme activity
PNAS 2004 101:1846-1851; published ahead of print February 4, 2004, doi:10.1073/pnas.0308426100
Select this article
Biological Sciences - Biochemistry:
- Klas Jönsson,
- Betty P. Guo,
- Hans-Jürg Monstein,
- John J. Mekalanos,
- and Göran Kronvall
Molecular cloning and characterization of two Helicobacter pylori genes coding for plasminogen-binding proteins
PNAS 2004 101:1852-1857; published ahead of print February 9, 2004, doi:10.1073/pnas.0307329101
Select this article
Biological Sciences - Biochemistry:
- Ed Hurt,
- Ming-juan Luo,
- Susanne Röther,
- Robin Reed,
- and Katja Sträßer
Cotranscriptional recruitment of the serine-arginine-rich (SR)-like proteins Gbp2 and Hrb1 to nascent mRNA via the TREX complex
PNAS 2004 101:1858-1862; published ahead of print February 9, 2004, doi:10.1073/pnas.0308663100
Select this article
Biological Sciences - Biochemistry:
- Keisuke Komoda,
- Satoshi Naito,
- and Masayuki Ishikawa
Replication of plant RNA virus genomes in a cell-free extract of evacuolated plant protoplasts
PNAS 2004 101:1863-1867; published ahead of print February 9, 2004, doi:10.1073/pnas.0307131101

Cell Biology

Select this article
Biological Sciences - Cell Biology:
- D. William Provance, Jr.,
- Christopher R. Gourley,
- Colleen M. Silan,
- L. C. Cameron,
- Kevan M. Shokat,
- James R. Goldenring,
- Kavita Shah,
- Peter G. Gillespie,
- and John A. Mercer
From the Cover: Chemical-genetic inhibition of a sensitized mutant myosin Vb demonstrates a role in peripheral-pericentriolar membrane traffic
PNAS 2004 101:1868-1873; published ahead of print February 6, 2004, doi:10.1073/pnas.0305895101
Select this article
Biological Sciences - Cell Biology:
- Mien V. Hoang,
- Mary C. Whelan,
- and Donald R. Senger
Rho activity critically and selectively regulates endothelial cell organization during angiogenesis
PNAS 2004 101:1874-1879; published ahead of print February 9, 2004, doi:10.1073/pnas.0308525100
Select this article
Biological Sciences - Cell Biology:
- I. Zucchi,
- A. Prinetti,
- M. Scotti,
- V. Valsecchi,
- R. Valaperta,
- E. Mento,
- R. Reinbold,
- P. Vezzoni,
- S. Sonnino,
- A. Albertini,
- and R. Dulbecco
Association of rat8 with Fyn protein kinase via lipid rafts is required for rat mammary cell differentiation in vitro
PNAS 2004 101:1880-1885; published ahead of print February 6, 2004, doi:10.1073/pnas.0307292101
Select this article
Biological Sciences - Cell Biology:
- Camilla Persson,
- Tobias Sjöblom,
- Arnoud Groen,
- Kai Kappert,
- Ulla Engström,
- Ulf Hellman,
- Carl-Henrik Heldin,
- Jeroen den Hertog,
- and Arne Östman
Preferential oxidation of the second phosphatase domain of receptor-like PTP-α revealed by an antibody against oxidized protein tyrosine phosphatases
PNAS 2004 101:1886-1891; published ahead of print February 4, 2004, doi:10.1073/pnas.0304403101
Select this article
Biological Sciences - Cell Biology:
- Peter C. Scacheri,
- Orit Rozenblatt-Rosen,
- Natasha J. Caplen,
- Tyra G. Wolfsberg,
- Lowell Umayam,
- Jeffrey C. Lee,
- Christina M. Hughes,
- Kalai Selvi Shanmugam,
- Arindam Bhattacharjee,
- Matthew Meyerson,
- and Francis S. Collins
Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells
PNAS 2004 101:1892-1897; published ahead of print February 9, 2004, doi:10.1073/pnas.0308698100
Select this article
Biological Sciences - Cell Biology:
- Antonio Parrado,
- Macarena Robledo,
- M. Rosa Moya-Quiles,
- Luis A. Marín,
- Christine Chomienne,
- Rose Ann Padua,
- and M. Rocío Álvarez-López
The promyelocytic leukemia zinc finger protein down-regulates apoptosis and expression of the proapoptotic BID protein in lymphocytes
PNAS 2004 101:1898-1903; published ahead of print February 9, 2004, doi:10.1073/pnas.0308358100

Evolution

Select this article
Biological Sciences - Evolution:
- T. Jonathan Davies,
- Timothy G. Barraclough,
- Mark W. Chase,
- Pamela S. Soltis,
- Douglas E. Soltis,
- and Vincent Savolainen
Darwin's abominable mystery: Insights from a supertree of the angiosperms
PNAS 2004 101:1904-1909; published ahead of print February 6, 2004, doi:10.1073/pnas.0308127100
Select this article
Biological Sciences - Evolution:
- Jongmin Nam,
- Joonyul Kim,
- Shinyoung Lee,
- Gynheung An,
- Hong Ma,
- and Masatoshi Nei
Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms
PNAS 2004 101:1910-1915; published ahead of print February 5, 2004, doi:10.1073/pnas.0308430100

Genetics

Select this article
Biological Sciences - Genetics:
- Sorin Istrail,
- Granger G. Sutton,
- Liliana Florea,
- Aaron L. Halpern,
- Clark M. Mobarry,
- Ross Lippert,
- Brian Walenz,
- Hagit Shatkay,
- Ian Dew,
- Jason R. Miller,
- Michael J. Flanigan,
- Nathan J. Edwards,
- Randall Bolanos,
- Daniel Fasulo,
- Bjarni V. Halldorsson,
- Sridhar Hannenhalli,
- Russell Turner,
- Shibu Yooseph,
- Fu Lu,
- Deborah R. Nusskern,
- Bixiong Chris Shue,
- Xiangqun Holly Zheng,
- Fei Zhong,
- Arthur L. Delcher,
- Daniel H. Huson,
- Saul A. Kravitz,
- Laurent Mouchard,
- Knut Reinert,
- Karin A. Remington,
- Andrew G. Clark,
- Michael S. Waterman,
- Evan E. Eichler,
- Mark D. Adams,
- Michael W. Hunkapiller,
- Eugene W. Myers,
- and J. Craig Venter
Whole-genome shotgun assembly and comparison of human genome assemblies
PNAS 2004 101:1916-1921; published ahead of print February 9, 2004, doi:10.1073/pnas.0307971100
Select this article
Biological Sciences - Genetics:
- Usha Acharya,
- Michael Beth Mowen,
- Kunio Nagashima,
- and Jairaj K. Acharya
Ceramidase expression facilitates membrane turnover and endocytosis of rhodopsin in photoreceptors
PNAS 2004 101:1922-1926; published ahead of print February 9, 2004, doi:10.1073/pnas.0308693100
Select this article
Biological Sciences - Genetics:
- Sunita Gupta,
- Rebecca A. Schoer,
- James E. Egan,
- Gregory J. Hannon,
- and Vivek Mittal
From the Cover: Inducible, reversible, and stable RNA interference in mammalian cells
PNAS 2004 101:1927-1932; published ahead of print February 4, 2004, doi:10.1073/pnas.0306111101
Select this article
Biological Sciences - Genetics:
- J. Aquiles Sanchez,
- Kenneth E. Pierce,
- John E. Rice,
- and Lawrence J. Wangh
Linear-After-The-Exponential (LATE)–PCR: An advanced method of asymmetric PCR and its uses in quantitative real-time analysis
PNAS 2004 101:1933-1938; published ahead of print February 9, 2004, doi:10.1073/pnas.0305476101
Select this article
Biological Sciences - Genetics:
- Danielle M. Friedrichsen,
- Janet L. Stanford,
- Sarah D. Isaacs,
- Marta Janer,
- Bao-li Chang,
- Kerry Deutsch,
- Elizabeth Gillanders,
- Suzanne Kolb,
- Katherine E. Wiley,
- Michael D. Badzioch,
- S. Lilly Zheng,
- Patrick C. Walsh,
- Gail P. Jarvik,
- Leroy Hood,
- Jeffrey M. Trent,
- William B. Isaacs,
- Elaine A. Ostrander,
- and Jianfeng Xu
Identification of a prostate cancer susceptibility locus on chromosome 7q11–21 in Jewish families
PNAS 2004 101:1939-1944; published ahead of print February 9, 2004, doi:10.1073/pnas.0308336100
Select this article
Biological Sciences - Genetics:
- B. H. Collins,
- E. Rosato,
- and C. P. Kyriacou
Seasonal behavior in Drosophila melanogaster requires the photoreceptors, the circadian clock, and phospholipase C
PNAS 2004 101:1945-1950; published ahead of print February 6, 2004, doi:10.1073/pnas.0308240100

Table of Contents

FROM THE COVER

Stepwise helix formation and chain compaction during protein folding

Slow-wave sleep, acetylcholine, and memory consolidation

Inaugural Article: Biography of Karl Hess

The elements of draping

Inaugural Article: Breakdown of Bell's theorem for certain objective local parameter spaces

From the Cover: Molecular modulation of calcium oxalate crystallization by osteopontin and citrate

Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment

Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems

From the Cover: Computational design of water-soluble analogues of the potassium channel KcsA

The role of protein tyrosine phosphatase 1B in Ras signaling

The glyceryl ester of prostaglandin E 2 mobilizes calcium and activates signal transduction in RAW264.7 cells

Cholesterol feeding of mice expressing cholesterol 7α-hydroxylase increases bile acid pool size despite decreased enzyme activity

Molecular cloning and characterization of two Helicobacter pylori genes coding for plasminogen-binding proteins

Cotranscriptional recruitment of the serine-arginine-rich (SR)-like proteins Gbp2 and Hrb1 to nascent mRNA via the TREX complex

Replication of plant RNA virus genomes in a cell-free extract of evacuolated plant protoplasts

From the Cover: Chemical-genetic inhibition of a sensitized mutant myosin Vb demonstrates a role in peripheral-pericentriolar membrane traffic

Rho activity critically and selectively regulates endothelial cell organization during angiogenesis

Association of rat8 with Fyn protein kinase via lipid rafts is required for rat mammary cell differentiation in vitro

Preferential oxidation of the second phosphatase domain of receptor-like PTP-α revealed by an antibody against oxidized protein tyrosine phosphatases

Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells

The promyelocytic leukemia zinc finger protein down-regulates apoptosis and expression of the proapoptotic BID protein in lymphocytes

Darwin's abominable mystery: Insights from a supertree of the angiosperms

Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms

Whole-genome shotgun assembly and comparison of human genome assemblies

Ceramidase expression facilitates membrane turnover and endocytosis of rhodopsin in photoreceptors

From the Cover: Inducible, reversible, and stable RNA interference in mammalian cells

Linear-After-The-Exponential (LATE)–PCR: An advanced method of asymmetric PCR and its uses in quantitative real-time analysis

Identification of a prostate cancer susceptibility locus on chromosome 7q11–21 in Jewish families

Seasonal behavior in Drosophila melanogaster requires the photoreceptors, the circadian clock, and phospholipase C

Mimicking live flavivirus immunization with a noninfectious RNA vaccine

Cofilin peptide homologs interfere with immunological synapse formation and T cell activation

Development of a specific system for targeting protein to metallophilic macrophages

IL-15 enhances the in vivo antitumor activity of tumor-reactive CD8 + T Cells

Activation-induced cytidine deaminase shuttles between nucleus and cytoplasm like apolipoprotein B mRNA editing catalytic polypeptide 1

Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut

Negative regulation of eosinophil recruitment to the lung by the chemokine monokine induced by IFN-γ (Mig, CXCL9)

GATA-3 deficiency abrogates the development and maintenance of T helper type 2 cells

Crystal structure of HLA-DQ0602 that protects against type 1 diabetes and confers strong susceptibility to narcolepsy

B cell development and immunoglobulin transcription in Oct-1-deficient mice