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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
February 3, 2004; 101 (5)
Index By Author
Cover Photo
FROM THE COVER
Biofilms help evade immune attack
Measuring cellular zinc concentration fluorescently
Oscillating genome activity in yeast
Plasmid-mediated virulence in mycobacteria
Pitch perception through neural topographic order
Commentaries
Commentary
:
Bogachan Sahin
and
James A. Bibb
Protein kinases talk to lipid phosphatases at the synapse
PNAS
2004
101
:
1112
-
1113
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0308374101
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See companion article on page
546
in issue 2 of volume 101
Commentary
:
Shihab A. Shamma
Topographic organization is essential for pitch perception
PNAS
2004
101
:
1114
-
1115
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307334101
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See companion article on page
1421
in issue 5 of volume 101
Commentary
:
Craig A. Townsend
Buruli toxin genes decoded
PNAS
2004
101
:
1116
-
1117
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307310101
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1345
in issue 5 of volume 101
Commentary
:
Michael W. Young
An ultradian clock shapes genome expression in yeast
PNAS
2004
101
:
1118
-
1119
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0400052101
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1200
in issue 5 of volume 101
Editorial
Editorial
:
Nicholas R. Cozzarelli
,
Kenneth R. Fulton
,
and
Diane M. Sullenberger
Results of a PNAS author survey on an open access option for publication
PNAS
2004
101
:
1111
;
doi:10.1073/pnas.0307315101
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Physical Sciences
Applied Mathematics
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Physical Sciences - Applied Mathematics
:
Joseph B. Keller
Diffusion at finite speed and random walks
PNAS
2004
101
:
1120
-
1122
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0307052101
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Biological Sciences - Physiology - Physical Sciences - Applied Mathematics
:
J. Sneyd
,
K. Tsaneva-Atanasova
,
D. I. Yule
,
J. L. Thompson
,
and
T. J. Shuttleworth
Control of calcium oscillations by membrane fluxes
PNAS
2004
101
:
1392
-
1396
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0303472101
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Supporting Text
Chemistry
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Chong-Yu Ruan
,
Franco Vigliotti
,
Vladimir A. Lobastov
,
Songye Chen
,
and
Ahmed H. Zewail
Ultrafast electron crystallography: Transient structures of molecules, surfaces, and phase transitions
PNAS
2004
101
:
1123
-
1128
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307302101
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Physical Sciences - Chemistry - Biological Sciences - Cell Biology
:
Christopher J. Chang
,
Jacek Jaworski
,
Elizabeth M. Nolan
,
Morgan Sheng
,
and
Stephen J. Lippard
From the Cover: A tautomeric zinc sensor for ratiometric fluorescence imaging: Application to nitric oxide-induced release of intracellular zinc
PNAS
2004
101
:
1129
-
1134
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0308079100
Abstract
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Statistics
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Physical Sciences - Statistics
:
Jianqing Fan
,
Paul Tam
,
George Vande Woude
,
and
Yi Ren
Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine
PNAS
2004
101
:
1135
-
1140
;
published ahead of print
January 22, 2004
,
doi:10.1073/pnas.0307557100
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Biological Sciences
Agricultural Sciences
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Biological Sciences - Agricultural Sciences
:
Sukanya Narasimhan
,
Ruth R. Montgomery
,
Kathleen DePonte
,
Christian Tschudi
,
Nancy Marcantonio
,
John F. Anderson
,
John R. Sauer
,
Michael Cappello
,
Fred S. Kantor
,
and
Erol Fikrig
Disruption of Ixodes scapularis anticoagulation by using RNA interference
PNAS
2004
101
:
1141
-
1146
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307669100
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Anthropology
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Biological Sciences - Anthropology
:
Katerina Harvati
,
Stephen R. Frost
,
and
Kieran P. McNulty
Neanderthal taxonomy reconsidered: Implications of 3D primate models of intra- and interspecific differences
PNAS
2004
101
:
1147
-
1152
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0308085100
Abstract
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Biochemistry
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Biological Sciences - Biochemistry
:
Eric Beitz
,
Slavica Pavlovic-Djuranovic
,
Masato Yasui
,
Peter Agre
,
and
Joachim E. Schultz
Molecular dissection of water and glycerol permeability of the aquaglyceroporin from Plasmodium falciparum by mutational analysis
PNAS
2004
101
:
1153
-
1158
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0307295101
Abstract
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Biological Sciences - Biochemistry
:
Olena Yermolaieva
,
Rong Xu
,
Carrie Schinstock
,
Nathan Brot
,
Herbert Weissbach
,
Stefan H. Heinemann
,
and
Toshinori Hoshi
Methionine sulfoxide reductase A protects neuronal cells against brief hypoxia/reoxygenation
PNAS
2004
101
:
1159
-
1164
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0308215100
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Biological Sciences - Biochemistry
:
Daniel M. Greif
,
David B. Sacks
,
and
Thomas Michel
Calmodulin phosphorylation and modulation of endothelial nitric oxide synthase catalysis
PNAS
2004
101
:
1165
-
1170
;
published ahead of print
January 21, 2004
,
doi:10.1073/pnas.0306377101
Abstract
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Supporting Methods
Biophysics
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
Chong-Yu Ruan
,
Franco Vigliotti
,
Vladimir A. Lobastov
,
Songye Chen
,
and
Ahmed H. Zewail
Ultrafast electron crystallography: Transient structures of molecules, surfaces, and phase transitions
PNAS
2004
101
:
1123
-
1128
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307302101
Abstract
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Biological Sciences - Biophysics
:
Takanori Uzawa
,
Shuji Akiyama
,
Tetsunari Kimura
,
Satoshi Takahashi
,
Koichiro Ishimori
,
Isao Morishima
,
and
Tetsuro Fujisawa
Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of α-helical content and compactness
PNAS
2004
101
:
1171
-
1176
;
published ahead of print
January 7, 2004
,
doi:10.1073/pnas.0305376101
Abstract
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Supporting Figure
See commentary article on page
1793
in issue 7 of volume 101
Select this article
Biological Sciences - Biophysics
:
Richard Stefl
,
Haihong Wu
,
Sapna Ravindranathan
,
Vladimír Sklenář
,
and
Juli Feigon
DNA A-tract bending in three dimensions: Solving the dA 4 T 4 vs. dT 4 A 4 conundrum
PNAS
2004
101
:
1177
-
1182
;
published ahead of print
January 22, 2004
,
doi:10.1073/pnas.0308143100
Abstract
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Supporting Table
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Biological Sciences - Biophysics
:
William R. Schief
,
Rutilio H. Clark
,
Alvaro H. Crevenna
,
and
Jonathon Howard
Inhibition of kinesin motility by ADP and phosphate supports a hand-over-hand mechanism
PNAS
2004
101
:
1183
-
1188
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0304369101
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Supporting Table
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Biological Sciences - Biophysics
:
Mihaela-Rita Mihailescu
and
John P. Marino
A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex
PNAS
2004
101
:
1189
-
1194
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0307966100
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Biological Sciences - Biophysics
:
Seishi Shimizu
Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments
PNAS
2004
101
:
1195
-
1199
;
published ahead of print
January 19, 2004
,
doi:10.1073/pnas.0305836101
Abstract
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Cell Biology
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Physical Sciences - Chemistry - Biological Sciences - Cell Biology
:
Christopher J. Chang
,
Jacek Jaworski
,
Elizabeth M. Nolan
,
Morgan Sheng
,
and
Stephen J. Lippard
From the Cover: A tautomeric zinc sensor for ratiometric fluorescence imaging: Application to nitric oxide-induced release of intracellular zinc
PNAS
2004
101
:
1129
-
1134
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0308079100
Abstract
Full Text
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Biological Sciences - Cell Biology
:
Robert R. Klevecz
,
James Bolen
,
Gerald Forrest
,
and
Douglas B. Murray
From the Cover: A genomewide oscillation in transcription gates DNA replication and cell cycle
PNAS
2004
101
:
1200
-
1205
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0306490101
Abstract
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Supporting Information
See commentary article on page
1118
in issue 5 of volume 101
Select this article
Biological Sciences - Cell Biology
:
Antonio Musarò
,
Cristina Giacinti
,
Giovanna Borsellino
,
Gabriella Dobrowolny
,
Laura Pelosi
,
Linda Cairns
,
Sergio Ottolenghi
,
Giulio Cossu
,
Giorgio Bernardi
,
Luca Battistini
,
Mario Molinaro
,
and
Nadia Rosenthal
Stem cell-mediated muscle regeneration is enhanced by local isoform of insulin-like growth factor 1
PNAS
2004
101
:
1206
-
1210
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0303792101
Abstract
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Biological Sciences - Cell Biology
:
Takayuki Okano-Uchida
,
Toshiyuki Himi
,
Yoshiaki Komiya
,
and
Yasuki Ishizaki
Cerebellar granule cell precursors can differentiate into astroglial cells
PNAS
2004
101
:
1211
-
1216
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307972100
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Biological Sciences - Cell Biology
:
Alessia Pascale
,
Pavel A. Gusev
,
Marialaura Amadio
,
Tania Dottorini
,
Stefano Govoni
,
Daniel L. Alkon
,
and
Alessandro Quattrone
Increase of the RNA-binding protein HuD and posttranscriptional up-regulation of the GAP-43 gene during spatial memory
PNAS
2004
101
:
1217
-
1222
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307674100
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Biological Sciences - Cell Biology
:
Ivan Plavec
,
Oksana Sirenko
,
Sylvie Privat
,
Yuker Wang
,
Maya Dajee
,
Jennifer Melrose
,
Brian Nakao
,
Evangelos Hytopoulos
,
Ellen L. Berg
,
and
Eugene C. Butcher
Method for analyzing signaling networks in complex cellular systems
PNAS
2004
101
:
1223
-
1228
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0308221100
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Supporting Tables
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Biological Sciences - Cell Biology
:
Ella Preger
,
Inbal Ziv
,
Ariel Shabtay
,
Ifat Sher
,
Michael Tsang
,
Igor B. Dawid
,
Yael Altuvia
,
and
Dina Ron
Alternative splicing generates an isoform of the human Sef gene with altered subcellular localization and specificity
PNAS
2004
101
:
1229
-
1234
;
published ahead of print
January 23, 2004
,
doi:10.1073/pnas.0307952100
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Biological Sciences - Cell Biology
:
Dan Chen
and
Qiang Zhou
Caspase cleavage of Bim EL triggers a positive feedback amplification of apoptotic signaling
PNAS
2004
101
:
1235
-
1240
;
published ahead of print
January 19, 2004
,
doi:10.1073/pnas.0308050100
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Biological Sciences - Cell Biology
:
C.-Y. Gui
,
L. Ngo
,
W. S. Xu
,
V. M. Richon
,
and
P. A. Marks
Histone deacetylase (HDAC) inhibitor activation of p21 WAF1 involves changes in promoter-associated proteins, including HDAC1
PNAS
2004
101
:
1241
-
1246
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0307708100
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Biological Sciences - Cell Biology
:
Thomas Wechsler
,
Benjamin P. C. Chen
,
Ryan Harper
,
Keiko Morotomi-Yano
,
Betty C. B. Huang
,
Katheryn Meek
,
James E. Cleaver
,
David J. Chen
,
and
Matthias Wabl
DNA–PKcs function regulated specifically by protein phosphatase 5
PNAS
2004
101
:
1247
-
1252
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0307765100
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Biological Sciences - Cell Biology
:
Manojkumar A. Puthenveedu
and
Adam D. Linstedt
Gene replacement reveals that p115/SNARE interactions are essential for Golgi biogenesis
PNAS
2004
101
:
1253
-
1256
;
published ahead of print
January 21, 2004
,
doi:10.1073/pnas.0306373101
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Biological Sciences - Cell Biology
:
Sarah E. Seton-Rogers
,
Yu Lu
,
Lisa M. Hines
,
Malvika Koundinya
,
Joshua LaBaer
,
Senthil K. Muthuswamy
,
and
Joan S. Brugge
Cooperation of the ErbB2 receptor and transforming growth factor β in induction of migration and invasion in mammary epithelial cells
PNAS
2004
101
:
1257
-
1262
;
published ahead of print
January 22, 2004
,
doi:10.1073/pnas.0308090100
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Genetics
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Biological Sciences - Genetics
:
Kayoko Kurita
,
Shawn M. Burgess
,
and
Noriyoshi Sakai
Transgenic zebrafish produced by retroviral infection of in vitro -cultured sperm
PNAS
2004
101
:
1263
-
1267
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0304265101
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Biological Sciences - Genetics
:
Jerzy Jurka
,
Oleksiy Kohany
,
Adam Pavlicek
,
Vladimir V. Kapitonov
,
and
Michael V. Jurka
Duplication, coclustering, and selection of human Alu retrotransposons
PNAS
2004
101
:
1268
-
1272
;
published ahead of print
January 21, 2004
,
doi:10.1073/pnas.0308084100
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Biological Sciences - Genetics
:
Yurij Ionov
,
Sei-Ichi Matsui
,
and
John K. Cowell
A role for p300/CREB binding protein genes in promoting cancer progression in colon cancer cell lines with microsatellite instability
PNAS
2004
101
:
1273
-
1278
;
published ahead of print
January 19, 2004
,
doi:10.1073/pnas.0307276101
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Immunology
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Biological Sciences - Immunology
:
P. Lukacik
,
P. Roversi
,
J. White
,
D. Esser
,
G. P. Smith
,
J. Billington
,
P. A. Williams
,
P. M. Rudd
,
M. R. Wormald
,
D. J. Harvey
,
M. D. M. Crispin
,
C. M. Radcliffe
,
R. A. Dwek
,
D. J. Evans
,
B. P. Morgan
,
R. A. G. Smith
,
and
S. M. Lea
Complement regulation at the molecular level: The structure of decay-accelerating factor
PNAS
2004
101
:
1279
-
1284
;
published ahead of print
January 20, 2004
,
doi:10.1073/pnas.0307200101
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Biological Sciences - Immunology
:
G. Panyi
,
G. Vámosi
,
Z. Bacsó
,
M. Bagdány
,
A. Bodnár
,
Z. Varga
,
R. Gáspár
,
L. Mátyus
,
and
S. Damjanovich
Kv1.3 potassium channels are localized in the immunological synapse formed between cytotoxic and target cells
PNAS
2004
101
:
1285
-
1290
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307421100
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Biological Sciences - Immunology
:
Jacob Bukczynski
,
Tao Wen
,
Kim Ellefsen
,
Jack Gauldie
,
and
Tania H. Watts
Costimulatory ligand 4-1BBL (CD137L) as an efficient adjuvant for human antiviral cytotoxic T cell responses
PNAS
2004
101
:
1291
-
1296
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0306567101
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Biological Sciences - Immunology
:
Feras I. Hawari
,
Farshid N. Rouhani
,
Xinle Cui
,
Zu-Xi Yu
,
Caitriona Buckley
,
Maryann Kaler
,
and
Stewart J. Levine
Release of full-length 55-kDa TNF receptor 1 in exosome-like vesicles: A mechanism for generation of soluble cytokine receptors
PNAS
2004
101
:
1297
-
1302
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0307981100
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Biological Sciences - Immunology
:
Theresa A. Willett
,
Abbie L. Meyer
,
Eric L. Brown
,
and
Brigitte T. Huber
An effective second-generation outer surface protein A-derived Lyme vaccine that eliminates a potentially autoreactive T cell epitope
PNAS
2004
101
:
1303
-
1308
;
published ahead of print
January 23, 2004
,
doi:10.1073/pnas.0305680101
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Medical Sciences
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Biological Sciences - Medical Sciences
:
Ludwig Wilkens
,
Peer Flemming
,
Michael Gebel
,
Joerg Bleck
,
Christof Terkamp
,
Luzie Wingen
,
Hans Kreipe
,
and
Brigitte Schlegelberger
Induction of aneuploidy by increasing chromosomal instability during dedifferentiation of hepatocellular carcinoma
PNAS
2004
101
:
1309
-
1314
;
published ahead of print
January 26, 2004
,
doi:10.1073/pnas.0305817101
Abstract
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