PNAS — Table of Contents — November 23, 2004, 101 (47)

Commentaries

Commentary:
- B. Leif Hanson
Getting protein solvent structures down cold
PNAS 2004 101:16393-16394; published ahead of print November 16, 2004, doi:10.1073/pnas.0407452101
- See companion article on page 16405 in issue 47 of volume 101
Commentary:
- Martin M. Matzuk
Germ-line immortality
PNAS 2004 101:16395-16396; published ahead of print November 16, 2004, doi:10.1073/pnas.0407344101
- See companion article on page 16489 in issue 47 of volume 101
Commentary:
- Jonathan A. Green
Defining the function of a prolactin gene family member
PNAS 2004 101:16397-16398; published ahead of print November 16, 2004, doi:10.1073/pnas.0406934101
- See companion article on page 16543 in issue 47 of volume 101
Commentary:
- Brian J. Bahnson
An atomic-resolution mechanism of 3-hydroxy-3-methylglutaryl–CoA synthase
PNAS 2004 101:16399-16400; published ahead of print November 16, 2004, doi:10.1073/pnas.0407418101
- See companion article on page 16442 in issue 47 of volume 101
Commentary:
- Thomas L. Schwarz
Synaptotagmin promotes both vesicle fusion and recycling
PNAS 2004 101:16401-16402; published ahead of print November 16, 2004, doi:10.1073/pnas.0407390101
- See companion article on page 16648 in issue 47 of volume 101
Commentary:
- Joseph Bonaventura
- and Andrew Gow
NO and superoxide: Opposite ends of the seesaw in cardiac contractility
PNAS 2004 101:16403-16404; published ahead of print November 16, 2004, doi:10.1073/pnas.0405859101
- See companion article on page 15944 in issue 45 of volume 101

Physical Sciences

Applied Mathematics

Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Genetics:
- Orly Alter
- and Gene H. Golub
Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription
PNAS 2004 101:16577-16582; published ahead of print November 15, 2004, doi:10.1073/pnas.0406767101

Chemistry

Select this article
Physical Sciences - Chemistry:
- M. P. Blakeley,
- A. J. Kalb (Gilboa),
- J. R. Helliwell,
- and D. A. A. Myles
From the Cover: The 15-K neutron structure of saccharide-free concanavalin A
PNAS 2004 101:16405-16410; published ahead of print November 3, 2004, doi:10.1073/pnas.0405109101
- See commentary article on page 16393 in issue 47 of volume 101

Geophysics

Select this article
Physical Sciences - Geophysics:
- Brian C. O'Neill
- and Michael Oppenheimer
Climate change impacts are sensitive to the concentration stabilization path
PNAS 2004 101:16411-16416; published ahead of print November 15, 2004, doi:10.1073/pnas.0405522101

Mathematics

Select this article
Physical Sciences - Mathematics:
- Ae Ja Yee
Partitions with difference conditions and Alder's conjecture
PNAS 2004 101:16417-16418; published ahead of print November 16, 2004, doi:10.1073/pnas.0406971101

Biological Sciences

Biochemistry

Select this article
Biological Sciences - Biochemistry:
- Jaeyul Kwon,
- Seung-Rock Lee,
- Kap-Seok Yang,
- Younghee Ahn,
- Yeun Ju Kim,
- Earl R. Stadtman,
- and Sue Goo Rhee
Reversible oxidation and inactivation of the tumor suppressor PTEN in cells stimulated with peptide growth factors
PNAS 2004 101:16419-16424; published ahead of print November 8, 2004, doi:10.1073/pnas.0407396101
Select this article
Biological Sciences - Biochemistry:
- Raj Kumar,
- David E. Volk,
- Jianquan Li,
- James C. Lee,
- David G. Gorenstein,
- and E. Brad Thompson
TATA box binding protein induces structure in the recombinant glucocorticoid receptor AF1 domain
PNAS 2004 101:16425-16430; published ahead of print November 15, 2004, doi:10.1073/pnas.0407160101
Select this article
Biological Sciences - Biochemistry:
- Wulf Blankenfeldt,
- Alexandre P. Kuzin,
- Tatiana Skarina,
- Yuriy Korniyenko,
- Liang Tong,
- Peter Bayer,
- Petra Janning,
- Linda S. Thomashow,
- and Dmitri V. Mavrodi
Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens
PNAS 2004 101:16431-16436; published ahead of print November 15, 2004, doi:10.1073/pnas.0407371101
Select this article
Biological Sciences - Biochemistry:
- J. Sohn,
- K. Kristjánsdóttir,
- A. Safi,
- B. Parker,
- B. Kiburz,
- and J. Rudolph
Remote hot spots mediate protein substrate recognition for the Cdc25 phosphatase
PNAS 2004 101:16437-16441; published ahead of print November 8, 2004, doi:10.1073/pnas.0407663101
Select this article
Biological Sciences - Biochemistry:
- Michael J. Theisen,
- Ila Misra,
- Dana Saadat,
- Nino Campobasso,
- Henry M. Miziorko,
- and David H. T. Harrison
From the Cover: 3-hydroxy-3-methylglutaryl–CoA synthase intermediate complex observed in “real-time”
PNAS 2004 101:16442-16447; published ahead of print October 21, 2004, doi:10.1073/pnas.0405809101
- See commentary article on page 16399 in issue 47 of volume 101
Select this article
Biological Sciences - Biochemistry:
- Birte Höcker,
- Jörg Claren,
- and Reinhard Sterner
Mimicking enzyme evolution by generating new (βα) 8 -barrels from (βα) 4 -half-barrels
PNAS 2004 101:16448-16453; published ahead of print November 11, 2004, doi:10.1073/pnas.0405832101
Select this article
Biological Sciences - Biochemistry:
- Feixia Chu,
- Shu-ou Shan,
- Demetri T. Moustakas,
- Frank Alber,
- Pascal F. Egea,
- Robert M. Stroud,
- Peter Walter,
- and Alma L. Burlingame
Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry
PNAS 2004 101:16454-16459; published ahead of print November 16, 2004, doi:10.1073/pnas.0407456101
Select this article
Biological Sciences - Biochemistry:
- Oliver Hartley,
- Hubert Gaertner,
- Jill Wilken,
- Darren Thompson,
- Richard Fish,
- Alejandra Ramos,
- Cristina Pastore,
- Brigitte Dufour,
- Fabrice Cerini,
- Astrid Melotti,
- Nikolaus Heveker,
- Laurent Picard,
- Marc Alizon,
- Donald Mosier,
- Stephen Kent,
- and Robin Offord
Medicinal chemistry applied to a synthetic protein: Development of highly potent HIV entry inhibitors
PNAS 2004 101:16460-16465; published ahead of print November 15, 2004, doi:10.1073/pnas.0404802101

Biophysics

Select this article
Biological Sciences - Biophysics:
- Jennifer C. Lee,
- Ralf Langen,
- Patrick A. Hummel,
- Harry B. Gray,
- and Jay R. Winkler
α-Synuclein structures from fluorescence energy-transfer kinetics: Implications for the role of the protein in Parkinson's disease
PNAS 2004 101:16466-16471; published ahead of print November 9, 2004, doi:10.1073/pnas.0407307101
Select this article
Biological Sciences - Biophysics:
- E. Perret,
- A. Leung,
- H. Feracci,
- and E. Evans
Trans-bonded pairs of E-cadherin exhibit a remarkable hierarchy of mechanical strengths
PNAS 2004 101:16472-16477; published ahead of print November 16, 2004, doi:10.1073/pnas.0402085101
Select this article
Biological Sciences - Biophysics:
- Rituparna S. Roy,
- Isabella L. Karle,
- S. Raghothama,
- and P. Balaram
α,β hybrid peptides: A polypeptide helix with a central segment containing two consecutive β-amino acid residues
PNAS 2004 101:16478-16482; published ahead of print November 16, 2004, doi:10.1073/pnas.0407557101

Developmental Biology

Select this article
Biological Sciences - Developmental Biology:
- Rupasri Ain,
- Guoli Dai,
- Judy H. Dunmore,
- Alan R. Godwin,
- and Michael J. Soares
From the Cover: A prolactin family paralog regulates reproductive adaptations to a physiological stressor
PNAS 2004 101:16543-16548; published ahead of print November 15, 2004, doi:10.1073/pnas.0406185101
- See commentary article on page 16397 in issue 47 of volume 101
Select this article
Biological Sciences - Developmental Biology:
- Ewa Wandzioch,
- Åsa Kolterud,
- Maria Jacobsson,
- Scott L. Friedman,
- and Leif Carlsson
Lhx2 –/– mice develop liver fibrosis
PNAS 2004 101:16549-16554; published ahead of print November 9, 2004, doi:10.1073/pnas.0404678101

Evolution

Select this article
Biological Sciences - Evolution:
- Liyun Liu,
- Thérèse Wilson,
- and J. Woodland Hastings
Molecular evolution of dinoflagellate luciferases, enzymes with three catalytic domains in a single polypeptide
PNAS 2004 101:16555-16560; published ahead of print November 15, 2004, doi:10.1073/pnas.0407597101
Select this article
Biological Sciences - Evolution:
- Robert Bleiweiss
Ultraviolet plumage reflectance distinguishes sibling bird species
PNAS 2004 101:16561-16564; published ahead of print November 16, 2004, doi:10.1073/pnas.0406386101
Select this article
Biological Sciences - Evolution:
- Else Marie Friis,
- Kaj Raunsgaard Pedersen,
- and Peter R. Crane
Araceae from the Early Cretaceous of Portugal: Evidence on the emergence of monocotyledons
PNAS 2004 101:16565-16570; published ahead of print November 16, 2004, doi:10.1073/pnas.0407174101
Select this article
Biological Sciences - Evolution:
- Catarina Rydin,
- Kaj Raunsgaard Pedersen,
- and Else Marie Friis
On the evolutionary history of Ephedra: Cretaceous fossils and extant molecules
PNAS 2004 101:16571-16576; published ahead of print November 15, 2004, doi:10.1073/pnas.0407588101

Genetics

Select this article
Physical Sciences - Applied Mathematics - Biological Sciences - Genetics:
- Orly Alter
- and Gene H. Golub
Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription
PNAS 2004 101:16577-16582; published ahead of print November 15, 2004, doi:10.1073/pnas.0406767101
Select this article
Biological Sciences - Genetics:
- Ahmad M. Khalil,
- Fatih Z. Boyar,
- and Daniel J. Driscoll
Dynamic histone modifications mark sex chromosome inactivation and reactivation during mammalian spermatogenesis
PNAS 2004 101:16583-16587; published ahead of print November 9, 2004, doi:10.1073/pnas.0406325101
Select this article
Biological Sciences - Genetics:
- Darryl Y. Nishimura,
- Melissa Fath,
- Robert F. Mullins,
- Charles Searby,
- Michael Andrews,
- Roger Davis,
- Jeaneen L. Andorf,
- Kirk Mykytyn,
- Ruth E. Swiderski,
- Baoli Yang,
- Rivka Carmi,
- Edwin M. Stone,
- and Val C. Sheffield
Bbs2 -null mice have neurosensory deficits, a defect in social dominance, and retinopathy associated with mislocalization of rhodopsin
PNAS 2004 101:16588-16593; published ahead of print November 11, 2004, doi:10.1073/pnas.0405496101
Select this article
Biological Sciences - Genetics:
- Jing Huang,
- Heng Zhu,
- Stephen J. Haggarty,
- David R. Spring,
- Heejun Hwang,
- Fulai Jin,
- Michael Snyder,
- and Stuart L. Schreiber
Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips
PNAS 2004 101:16594-16599; published ahead of print November 11, 2004, doi:10.1073/pnas.0407117101

Immunology

Select this article
Biological Sciences - Immunology:
- Juan M. Zapata,

Table of Contents

FROM THE COVER

Getting protein solvent structures down cold

Germ-line immortality

Defining the function of a prolactin gene family member

An atomic-resolution mechanism of 3-hydroxy-3-methylglutaryl–CoA synthase

Synaptotagmin promotes both vesicle fusion and recycling

NO and superoxide: Opposite ends of the seesaw in cardiac contractility

Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

From the Cover: The 15-K neutron structure of saccharide-free concanavalin A

Climate change impacts are sensitive to the concentration stabilization path

Partitions with difference conditions and Alder's conjecture

Reversible oxidation and inactivation of the tumor suppressor PTEN in cells stimulated with peptide growth factors

TATA box binding protein induces structure in the recombinant glucocorticoid receptor AF1 domain

Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens

Remote hot spots mediate protein substrate recognition for the Cdc25 phosphatase

From the Cover: 3-hydroxy-3-methylglutaryl–CoA synthase intermediate complex observed in “real-time”

Mimicking enzyme evolution by generating new (βα) 8 -barrels from (βα) 4 -half-barrels

Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry

Medicinal chemistry applied to a synthetic protein: Development of highly potent HIV entry inhibitors

α-Synuclein structures from fluorescence energy-transfer kinetics: Implications for the role of the protein in Parkinson's disease

Trans-bonded pairs of E-cadherin exhibit a remarkable hierarchy of mechanical strengths

α,β hybrid peptides: A polypeptide helix with a central segment containing two consecutive β-amino acid residues

The role of the glycocalyx in reorganization of the actin cytoskeleton under fluid shear stress: A “bumper-car” model

Growth factors essential for self-renewal and expansion of mouse spermatogonial stem cells

Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques

Glyceraldehyde 3-phosphate dehydrogenase-S, a sperm-specific glycolytic enzyme, is required for sperm motility and male fertility

Mitochondrial biogenesis by NO yields functionally active mitochondria in mammals

Fluorescent indicators of cAMP and Epac activation reveal differential dynamics of cAMP signaling within discrete subcellular compartments

A mitotic kinesin-like protein required for normal karyokinesis, myosin localization to the furrow, and cytokinesis in Dictyostelium

Distinct pathways of insulin-regulated versus diabetes-regulated gene expression: An in vivo analysis in MIRKO mice

LIM domains-containing protein 1 (LIMD1), a tumor suppressor encoded at chromosome 3p21.3, binds pRB and represses E2F-driven transcription

Recruitment of IκBα to the hes1 promoter is associated with transcriptional repression

From the Cover: A prolactin family paralog regulates reproductive adaptations to a physiological stressor

Lhx2 –/– mice develop liver fibrosis

Molecular evolution of dinoflagellate luciferases, enzymes with three catalytic domains in a single polypeptide

Ultraviolet plumage reflectance distinguishes sibling bird species

Araceae from the Early Cretaceous of Portugal: Evidence on the emergence of monocotyledons

On the evolutionary history of Ephedra: Cretaceous fossils and extant molecules

Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

Dynamic histone modifications mark sex chromosome inactivation and reactivation during mammalian spermatogenesis

Bbs2 -null mice have neurosensory deficits, a defect in social dominance, and retinopathy associated with mislocalization of rhodopsin

Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips