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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
May 4, 2004; 101 (18)
Index By Author
Cover Photo
FROM THE COVER
Targeting nucleosomal supergrooves
Probability of protein dimer conformations
L-selectin tethers leukocytes in shear flow
Protein folding: Prediction versus experimentation
Pinpointing age-related hippocampal dysfunction
Commentaries
Commentary
:
K. Crozat
and
B. Beutler
TLR7: A new sensor of viral infection
PNAS
2004
101
:
6835
-
6836
;
published ahead of print
April 27, 2004
,
doi:10.1073/pnas.0401347101
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5598
in issue 15 of volume 101
Commentary
:
Peter G. Wolynes
Latest folding game results: Protein A barely frustrates computationalists
PNAS
2004
101
:
6837
-
6838
;
published ahead of print
April 27, 2004
,
doi:10.1073/pnas.0402034101
Extract
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See companion article on page
6952
in issue 18 of volume 101
Commentary
:
Kerry Bloom
Microtubule composition: Cryptography of dynamic polymers
PNAS
2004
101
:
6839
-
6840
;
published ahead of print
April 27, 2004
,
doi:10.1073/pnas.0401266101
Extract
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5577
in issue 15 of volume 101
Physical Sciences
Chemistry
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Physical Sciences - Chemistry
:
Ivano Bertini
,
Cristina Del Bianco
,
Ioannis Gelis
,
Nikolaus Katsaros
,
Claudio Luchinat
,
Giacomo Parigi
,
Massimiliano Peana
,
Alessandro Provenzani
,
and
Maria Antonietta Zoroddu
From the Cover: Experimentally exploring the conformational space sampled by domain reorientation in calmodulin
PNAS
2004
101
:
6841
-
6846
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0308641101
Abstract
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Geology
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Physical Sciences - Geology
:
Mahesh Anand
,
Lawrence A. Taylor
,
Mikhail A. Nazarov
,
J. Shu
,
H.-K. Mao
,
and
Russell J. Hemley
Space weathering on airless planetary bodies: Clues from the lunar mineral hapkeite
PNAS
2004
101
:
6847
-
6851
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0401565101
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Biological Sciences
Applied Biological Sciences
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Biological Sciences - Applied Biological Sciences
:
Sylvestre Marillonnet
,
Anatoli Giritch
,
Mario Gils
,
Romy Kandzia
,
Victor Klimyuk
,
and
Yuri Gleba
In planta engineering of viral RNA replicons: Efficient assembly by recombination of DNA modules delivered by Agrobacterium
PNAS
2004
101
:
6852
-
6857
;
published ahead of print
April 21, 2004
,
doi:10.1073/pnas.0400149101
Abstract
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Biological Sciences - Applied Biological Sciences
:
Ludger Grosse-Hovest
,
Sigrid Müller
,
Rosa Minoia
,
Eckhard Wolf
,
Valeri Zakhartchenko
,
Hendrik Wenigerkind
,
Caroline Lassnig
,
Urban Besenfelder
,
Mathias Müller
,
Simon D. Lytton
,
Gundram Jung
,
and
Gottfried Brem
Cloned transgenic farm animals produce a bispecific antibody for T cell-mediated tumor cell killing
PNAS
2004
101
:
6858
-
6863
;
published ahead of print
April 22, 2004
,
doi:10.1073/pnas.0308487101
Abstract
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Biochemistry
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Biological Sciences - Biochemistry
:
Rajeswari S. Edayathumangalam
,
Philipp Weyermann
,
Joel M. Gottesfeld
,
Peter B. Dervan
,
and
Karolin Luger
From the Cover: Molecular recognition of the nucleosomal “supergroove”
PNAS
2004
101
:
6864
-
6869
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0401743101
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Biological Sciences - Biochemistry
:
Alan B. Marnett
,
Anson M. Nomura
,
Nobuhisa Shimba
,
Paul R. Ortiz de Montellano
,
and
Charles S. Craik
Communication between the active sites and dimer interface of a herpesvirus protease revealed by a transition-state inhibitor
PNAS
2004
101
:
6870
-
6875
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0401613101
Abstract
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Supporting Text
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Biological Sciences - Biochemistry
:
Chawnshang Chang
,
Yen-Ta Chen
,
Shauh-Der Yeh
,
Qingquan Xu
,
Ruey-Sheng Wang
,
Florian Guillou
,
Henry Lardy
,
and
Shuyuan Yeh
Infertility with defective spermatogenesis and hypotestosteronemia in male mice lacking the androgen receptor in Sertoli cells
PNAS
2004
101
:
6876
-
6881
;
published ahead of print
April 23, 2004
,
doi:10.1073/pnas.0307306101
Abstract
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Biological Sciences - Biochemistry
:
Michelle C. Y. Chang
,
Cyril S. Yee
,
JoAnne Stubbe
,
and
Daniel G. Nocera
Turning on ribonucleotide reductase by light-initiated amino acid radical generation
PNAS
2004
101
:
6882
-
6887
;
published ahead of print
April 27, 2004
,
doi:10.1073/pnas.0401718101
Abstract
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Biological Sciences - Biochemistry
:
Brent Segelke
,
Mark Knapp
,
Saloumeh Kadkhodayan
,
Rod Balhorn
,
and
Bernhard Rupp
Crystal structure of Clostridium botulinum neurotoxin protease in a product-bound state: Evidence for noncanonical zinc protease activity
PNAS
2004
101
:
6888
-
6893
;
published ahead of print
April 23, 2004
,
doi:10.1073/pnas.0400584101
Abstract
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Biological Sciences - Biochemistry
:
Nick Shkriabai
,
Sachindra S. Patil
,
Sonja Hess
,
Scott R. Budihas
,
Robert Craigie
,
Terrence R. Burke, Jr.
,
Stuart F. J. Le Grice
,
and
Mamuka Kvaratskhelia
Identification of an inhibitor-binding site to HIV-1 integrase with affinity acetylation and mass spectrometry
PNAS
2004
101
:
6894
-
6899
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0400873101
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Biological Sciences - Biochemistry
:
Lori A. Plum
,
Jean M. Prahl
,
Xiaohong Ma
,
Rafal R. Sicinski
,
Sumithra Gowlugari
,
Margaret Clagett-Dame
,
and
Hector F. DeLuca
Biologically active noncalcemic analogs of 1α,25-dihydroxyvitamin D with an abbreviated side chain containing no hydroxyl
PNAS
2004
101
:
6900
-
6904
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0401656101
Abstract
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Biological Sciences - Biochemistry
:
Aghdass Rasouli-Nia
,
Feridoun Karimi-Busheri
,
and
Michael Weinfeld
Stable down-regulation of human polynucleotide kinase enhances spontaneous mutation frequency and sensitizes cells to genotoxic agents
PNAS
2004
101
:
6905
-
6910
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0400099101
Abstract
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Supporting Figure
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Biological Sciences - Biochemistry
:
Mofang Liu
,
Michael Tolstorukov
,
Victor Zhurkin
,
Susan Garges
,
and
Sankar Adhya
A mutant spacer sequence between -35 and -10 elements makes the P lac promoter hyperactive and cAMP receptor protein-independent
PNAS
2004
101
:
6911
-
6916
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0401929101
Abstract
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Biological Sciences - Biochemistry
:
Eric M. Tam
,
Charlotte J. Morrison
,
Yi I. Wu
,
M. Sharon Stack
,
and
Christopher M. Overall
Membrane protease proteomics: Isotope-coded affinity tag MS identification of undescribed MT1–matrix metalloproteinase substrates
PNAS
2004
101
:
6917
-
6922
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0305862101
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Biological Sciences - Biochemistry
:
María Gómez
and
Neil Brockdorff
Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage
PNAS
2004
101
:
6923
-
6928
;
published ahead of print
April 22, 2004
,
doi:10.1073/pnas.0401854101
Abstract
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Supporting Figures
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Biological Sciences - Biochemistry
:
Sherry D. Painter
,
Scott F. Cummins
,
Amy E. Nichols
,
David-B. G. Akalal
,
Catherine H. Schein
,
Werner Braun
,
John S. Smith
,
Abraham J. Susswein
,
Miriam Levy
,
Pamela A. C. M. de Boer
,
Andries ter Maat
,
Mark W. Miller
,
Cory Scanlan
,
Richard M. Milberg
,
Jonathan V. Sweedler
,
and
Gregg T. Nagle
Structural and functional analysis of Aplysia attractins, a family of water-borne protein pheromones with interspecific attractiveness
PNAS
2004
101
:
6929
-
6933
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0306339101
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Supporting Information
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Biological Sciences - Biochemistry
:
Xiaochun Fan
,
Hua Shi
,
Karen Adelman
,
and
John T. Lis
Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes
PNAS
2004
101
:
6934
-
6939
;
published ahead of print
April 21, 2004
,
doi:10.1073/pnas.0401523101
Abstract
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Biophysics
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Biological Sciences - Biophysics - Immunology
:
Ulrich S. Schwarz
and
Ronen Alon
From the Cover: L-selectin-mediated leukocyte tethering in shear flow is controlled by multiple contacts and cytoskeletal anchorage facilitating fast rebinding events
PNAS
2004
101
:
6940
-
6945
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0305822101
Abstract
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Supporting Text
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Biological Sciences - Biophysics
:
Alexandre V. Morozov
,
Tanja Kortemme
,
Kiril Tsemekhman
,
and
David Baker
Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
PNAS
2004
101
:
6946
-
6951
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0307578101
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Biological Sciences - Biophysics
:
Satoshi Sato
,
Tomasz L. Religa
,
Valerie Daggett
,
and
Alan R. Fersht
From the Cover: Testing protein-folding simulations by experiment: B domain of protein A
PNAS
2004
101
:
6952
-
6956
;
published ahead of print
April 6, 2004
,
doi:10.1073/pnas.0401396101
Abstract
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See commentary article on page
6837
in issue 18 of volume 101
Select this article
Biological Sciences - Biophysics
:
Marc Delarue
and
Philippe Dumas
On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models
PNAS
2004
101
:
6957
-
6962
;
published ahead of print
April 19, 2004
,
doi:10.1073/pnas.0400301101
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Biological Sciences - Biophysics
:
C. P. Johnson
,
I. Fujimoto
,
C. Perrin-Tricaud
,
U. Rutishauser
,
and
D. Leckband
Mechanism of homophilic adhesion by the neural cell adhesion molecule: Use of multiple domains and flexibility
PNAS
2004
101
:
6963
-
6968
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0307567100
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Biological Sciences - Biophysics
:
John van Noort
,
Sander Verbrugge
,
Nora Goosen
,
Cees Dekker
,
and
Remus Thei Dame
Dual architectural roles of HU: Formation of flexible hinges and rigid filaments
PNAS
2004
101
:
6969
-
6974
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0308230101
Abstract
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Cell Biology
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Biological Sciences - Cell Biology
:
Anne Aries
,
Pierre Paradis
,
Chantal Lefebvre
,
Robert J. Schwartz
,
and
Mona Nemer
Essential role of GATA-4 in cell survival and drug-induced cardiotoxicity
PNAS
2004
101
:
6975
-
6980
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0401833101
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Biological Sciences - Cell Biology
:
Tomas Vomastek
,
Hans-Joerg Schaeffer
,
Adel Tarcsafalvi
,
Mark E. Smolkin
,
Eric A. Bissonette
,
and
Michael J. Weber
Modular construction of a signaling scaffold: MORG1 interacts with components of the ERK cascade and links ERK signaling to specific agonists
PNAS
2004
101
:
6981
-
6986
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0305894101
Abstract
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Biological Sciences - Cell Biology
:
Alexandra Fridkin
,
Erez Mills
,
Ayelet Margalit
,
Esther Neufeld
,
Kenneth K. Lee
,
Naomi Feinstein
,
Merav Cohen
,
Katherine L. Wilson
,
and
Yosef Gruenbaum
Matefin, a Caenorhabditis elegans germ line-specific SUN-domain nuclear membrane protein, is essential for early embryonic and germ cell development
PNAS
2004
101
:
6987
-
6992
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0307880101
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Biological Sciences - Cell Biology
:
Jee-Yin Ahn
,
Yuanxin Hu
,
Todd G. Kroll
,
Paulette Allard
,
and
Keqiang Ye
PIKE-A is amplified in human cancers and prevents apoptosis by up-regulating Akt
PNAS
2004
101
:
6993
-
6998
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0400921101
Abstract
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Biological Sciences - Cell Biology
:
Brian G. Drew
,
Noel H. Fidge
,
Gabrielle Gallon-Beaumier
,
Bruce E. Kemp
,
and
Bronwyn A. Kingwell
High-density lipoprotein and apolipoprotein AI increase endothelial NO synthase activity by protein association and multisite phosphorylation
PNAS
2004
101
:
6999
-
7004
;
published ahead of print
April 23, 2004
,
doi:10.1073/pnas.0306266101
Abstract
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Developmental Biology
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Biological Sciences - Developmental Biology
:
Mariko Katoh
,
Chad Shaw
,
Qikai Xu
,
Nancy Van Driessche
,
Takahiro Morio
,
Hidekazu Kuwayama
,
Shinji Obara
,
Hideko Urushihara
,
Yoshimasa Tanaka
,
and
Gad Shaulsky
An orderly retreat: Dedifferentiation is a regulated process
PNAS
2004
101
:
7005
-
7010
;
published ahead of print
April 21, 2004
,
doi:10.1073/pnas.0306983101
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Evolution
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Biological Sciences - Evolution
:
Joshua A. Bittker
,
Brian V. Le
,
Jane M. Liu
,
and
David R. Liu
Directed evolution of protein enzymes using nonhomologous random recombination
PNAS
2004
101
:
7011
-
7016
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0402202101
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Biological Sciences - Evolution
:
Natalia L. Komarova
and
Dominik Wodarz
The optimal rate of chromosome loss for the inactivation of tumor suppressor genes in cancer
PNAS
2004
101
:
7017
-
7021
;
published ahead of print
April 22, 2004
,
doi:10.1073/pnas.0401943101
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Genetics
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Biological Sciences - Genetics
:
Jeffrey O. Bush
,
Yu Lan
,
and
Rulang Jiang
The cleft lip and palate defects in Dancer mutant mice result from gain of function of the Tbx10 gene
PNAS
2004
101
:
7022
-
7027
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0401025101
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Biological Sciences - Genetics
:
AeRi Kim
and
Ann Dean
Developmental stage differences in chromatin subdomains of the β-globin locus
PNAS
2004
101
:
7028
-
7033
;
published ahead of print
April 22, 2004
,
doi:10.1073/pnas.0307985101
Abstract
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Biological Sciences - Genetics
:
J. H. F. Pedra
,
L. M. McIntyre
,
M. E. Scharf
,
and
Barry R. Pittendrigh
Genome-wide transcription profile of field- and laboratory-selected dichlorodiphenyltrichloroethane (DDT)-resistant Drosophila
PNAS
2004
101
:
7034
-
7039
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0400580101
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Biological Sciences - Genetics
:
Z. W. Luo
,
R. M. Zhang
,
and
M. J. Kearsey
Theoretical basis for genetic linkage analysis in autotetraploid species
PNAS
2004
101
:
7040
-
7045
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0304482101
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Biological Sciences - Genetics
:
Magnus Lundgren
,
Anders Andersson
,
Lanming Chen
,
Peter Nilsson
,
and
Rolf Bernander
Three replication origins in Sulfolobus species: Synchronous initiation of chromosome replication and asynchronous termination
PNAS
2004
101
:
7046
-
7051
;
published ahead of print
April 23, 2004
,
doi:10.1073/pnas.0400656101
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Immunology
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Biological Sciences - Biophysics - Immunology
:
Ulrich S. Schwarz
and
Ronen Alon
From the Cover: L-selectin-mediated leukocyte tethering in shear flow is controlled by multiple contacts and cytoskeletal anchorage facilitating fast rebinding events
PNAS
2004
101
:
6940
-
6945
;
published ahead of print
April 20, 2004
,
doi:10.1073/pnas.0305822101
Abstract
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Biological Sciences - Immunology
:
Andreas Villunger
,
Vanessa S. Marsden
,
Yifan Zhan
,
Miriam Erlacher
,
Andrew M. Lew
,
Philippe Bouillet
,
Stuart Berzins
,
Dale I. Godfrey
,
William R. Heath
,
and
Andreas Strasser
Negative selection of semimature CD4 + 8 - HSA + thymocytes requires the BH3-only protein Bim but is independent of death receptor signaling
PNAS
2004
101
:
7052
-
7057
;
published ahead of print
April 26, 2004
,
doi:10.1073/pnas.0305757101
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Biological Sciences - Immunology
:
Johan K. Sandberg
,
Cheryl A. Stoddart
,
Fabienne Brilot
,
Kimberly A. Jordan
,
and