Commentaries

  • Commentary:
    • Susan E. Fahrbach

    What arthropod brains say about arthropod phylogeny

    PNAS 2004 101:3723-3724; published ahead of print March 9, 2004, doi:10.1073/pnas.0400472101
    • See companion article on page 3868 in issue 11 of volume 101
  • Commentary:
    • Shari M. Kaiser
    • and Michael Emerman

    Controlling lentiviruses: Single amino acid changes can determine specificity

    PNAS 2004 101:3725-3726; published ahead of print March 9, 2004, doi:10.1073/pnas.0400929101
    • See companion article on page 3770 in issue 11 of volume 101
    • See companion article on page 3927 in issue 11 of volume 101

Editorial

  • Editorial:
    • Nicholas R. Cozzarelli

    UPSIDE: Uniform Principle for Sharing Integral Data and Materials Expeditiously

    PNAS 2004 101:3721-3722; doi:10.1073/pnas.0400437101

Biography

  • Biography:
    • Emma Hitt

    Inaugural Article: Biography of Martha L. Ludwig

    PNAS 2004 101:3727-3728; published ahead of print March 9, 2004, doi:10.1073/pnas.0401014101
    • See commentary article on page 3729 in issue 11 of volume 101
  • Biography:
    • Christen Brownlee

    Inaugural Article: Biography of Jan-Åke Gustafsson

    PNAS 2004 101:3737-3738; published ahead of print March 9, 2004, doi:10.1073/pnas.0401117101
    • See commentary article on page 3739 in issue 11 of volume 101

Physical Sciences

Applied Physical Sciences

  • Physical Sciences - Applied Physical Sciences:
    • A. Barrat,
    • M. Barthélemy,
    • R. Pastor-Satorras,
    • and A. Vespignani

    The architecture of complex weighted networks

    PNAS 2004 101:3747-3752; published ahead of print March 8, 2004, doi:10.1073/pnas.0400087101

Geology

  • Physical Sciences - Geology:
    • Gerta Keller,
    • Thierry Adatte,
    • Wolfgang Stinnesbeck,
    • Mario Rebolledo-Vieyra,
    • Jaime Urrutia Fucugauchi,
    • Utz Kramar,
    • and Doris Stüben

    From the Cover: Chicxulub impact predates the K-T boundary mass extinction

    PNAS 2004 101:3753-3758; published ahead of print March 2, 2004, doi:10.1073/pnas.0400396101

Biological Sciences

Biochemistry

  • Biological Sciences - Biochemistry:
    • Jaya K. Kumar,
    • Stanley Tabor,
    • and Charles C. Richardson

    Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli

    PNAS 2004 101:3759-3764; published ahead of print March 2, 2004, doi:10.1073/pnas.0308701101
  • Biological Sciences - Biochemistry:
    • Hiroki R. Ueda,
    • Satoko Hayashi,
    • Shinichi Matsuyama,
    • Tetsuya Yomo,
    • Seiichi Hashimoto,
    • Steve A. Kay,
    • John B. Hogenesch,
    • and Masamitsu Iino

    Universality and flexibility in gene expression from bacteria to human

    PNAS 2004 101:3765-3769; published ahead of print March 3, 2004, doi:10.1073/pnas.0306244101
  • Biological Sciences - Biochemistry:
    • Hal P. Bogerd,
    • Brian P. Doehle,
    • Heather L. Wiegand,
    • and Bryan R. Cullen

    From the Cover: A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor

    PNAS 2004 101:3770-3774; published ahead of print March 3, 2004, doi:10.1073/pnas.0307713101
    • See commentary article on page 3725 in issue 11 of volume 101
  • Biological Sciences - Biochemistry:
    • Yuri Pekarsky,
    • Preston N. Garrison,
    • Alexey Palamarchuk,
    • Nicola Zanesi,
    • Rami I. Aqeilan,
    • Kay Huebner,
    • Larry D. Barnes,
    • and Carlo M. Croce

    Fhit is a physiological target of the protein kinase Src

    PNAS 2004 101:3775-3779; published ahead of print March 8, 2004, doi:10.1073/pnas.0400481101
  • Biological Sciences - Biochemistry:
    • Y. Manevich,
    • S. I. Feinstein,
    • and A. B. Fisher

    Activation of the antioxidant enzyme 1-CYS peroxiredoxin requires glutathionylation mediated by heterodimerization with πGST

    PNAS 2004 101:3780-3785; published ahead of print March 2, 2004, doi:10.1073/pnas.0400181101
  • Biological Sciences - Biochemistry:
    • Luisa Cochella
    • and Rachel Green

    Isolation of antibiotic resistance mutations in the rRNA by using an in vitro selection system

    PNAS 2004 101:3786-3791; published ahead of print March 4, 2004, doi:10.1073/pnas.0307596101
  • Biological Sciences - Biochemistry:
    • Marie-Pierre Egloff,
    • François Ferron,
    • Valérie Campanacci,
    • Sonia Longhi,
    • Corinne Rancurel,
    • Hélène Dutartre,
    • Eric J. Snijder,
    • Alexander E. Gorbalenya,
    • Christian Cambillau,
    • and Bruno Canard

    The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world

    PNAS 2004 101:3792-3796; published ahead of print March 8, 2004, doi:10.1073/pnas.0307877101

Biophysics

  • Biological Sciences - Biophysics:
    • John C. Evans,
    • Donald P. Huddler,
    • Mark T. Hilgers,
    • Gail Romanchuk,
    • Rowena G. Matthews,
    • and Martha L. Ludwig

    Inaugural Article: Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase

    PNAS 2004 101:3729-3736; published ahead of print January 29, 2004, doi:10.1073/pnas.0308082100
    • See commentary article on page 3727 in issue 11 of volume 101
  • Biological Sciences - Biophysics:
    • In-Geol Choi,
    • Jaimyoung Kwon,
    • and Sung-Hou Kim

    Local feature frequency profile: A method to measure structural similarity in proteins

    PNAS 2004 101:3797-3802; published ahead of print February 25, 2004, doi:10.1073/pnas.0308656100
  • Biological Sciences - Biophysics:
    • Ralph Jimenez,
    • Georgina Salazar,
    • Jun Yin,
    • Taiha Joo,
    • and Floyd E. Romesberg

    Protein dynamics and the immunological evolution of molecular recognition

    PNAS 2004 101:3803-3808; published ahead of print March 4, 2004, doi:10.1073/pnas.0305745101
  • Biological Sciences - Biophysics:
    • George Dimitriadis,
    • Adam Drysdale,
    • Jeffrey K. Myers,
    • Pooja Arora,
    • Sheena E. Radford,
    • Terence G. Oas,
    • and D. Alastair Smith

    Microsecond folding dynamics of the F13W G29A mutant of the B domain of staphylococcal protein A by laser-induced temperature jump

    PNAS 2004 101:3809-3814; published ahead of print March 8, 2004, doi:10.1073/pnas.0306433101
  • Biological Sciences - Biophysics:
    • M. Yashar S. Kalani,
    • Nagarajan Vaidehi,
    • Spencer E. Hall,
    • Rene J. Trabanino,
    • Peter L. Freddolino,
    • Maziyar A. Kalani,
    • Wely B. Floriano,
    • Victor Wai Tak Kam,
    • and William A. Goddard, III

    The predicted 3D structure of the human D2 dopamine receptor and the binding site and binding affinities for agonists and antagonists

    PNAS 2004 101:3815-3820; published ahead of print March 3, 2004, doi:10.1073/pnas.0400100101
  • Biological Sciences - Biophysics:
    • Sergey Zubkov,
    • William J. Lennarz,
    • and Smita Mohanty

    Structural basis for the function of a minimembrane protein subunit of yeast oligosaccharyltransferase

    PNAS 2004 101:3821-3826; published ahead of print March 4, 2004, doi:10.1073/pnas.0400512101

Cell Biology

  • Biological Sciences - Cell Biology:
    • Chisako Kamano,
    • Parsia A. Vagefi,
    • Naoki Kumagai,
    • Shin Yamamoto,
    • Rolf N. Barth,
    • John C. LaMattina,
    • Shannon G. Moran,
    • David H. Sachs,
    • and Kazuhiko Yamada

    Vascularized thymic lobe transplantation in miniature swine: Thymopoiesis and tolerance induction across fully MHC-mismatched barriers

    PNAS 2004 101:3827-3832; published ahead of print March 8, 2004, doi:10.1073/pnas.0306666101
  • Biological Sciences - Cell Biology:
    • Francois Blondeau,
    • Brigitte Ritter,
    • Patrick D. Allaire,
    • Sylwia Wasiak,
    • Martine Girard,
    • Natasha K. Hussain,
    • Annie Angers,
    • Valerie Legendre-Guillemin,
    • Line Roy,
    • Daniel Boismenu,
    • Robert E. Kearney,
    • Alexander W. Bell,
    • John J. M. Bergeron,
    • and Peter S. McPherson

    Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling

    PNAS 2004 101:3833-3838; published ahead of print March 8, 2004, doi:10.1073/pnas.0308186101
  • Biological Sciences - Cell Biology:
    • Arash Komeili,
    • Hojatollah Vali,
    • Terrance J. Beveridge,
    • and Dianne K. Newman

    Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation

    PNAS 2004 101:3839-3844; published ahead of print March 2, 2004, doi:10.1073/pnas.0400391101
  • Biological Sciences - Cell Biology:
    • Patricia V. Burgos,
    • Carla Klattenhoff,
    • Erwin de la Fuente,
    • Attilio Rigotti,
    • and Alfonso González

    Cholesterol depletion induces PKA-mediated basolateral-to-apical transcytosis of the scavenger receptor class B type I in MDCK cells

    PNAS 2004 101:3845-3850; published ahead of print March 8, 2004, doi:10.1073/pnas.0400295101

Developmental Biology

  • Biological Sciences - Developmental Biology:
    • Albert Erives
    • and Michael Levine

    Coordinate enhancers share common organizational features in the Drosophila genome

    PNAS 2004 101:3851-3856; published ahead of print March 16, 2004, doi:10.1073/pnas.0400611101
  • Biological Sciences - Developmental Biology:
    • Molly Duman-Scheel,
    • Laura A. Johnston,
    • and Wei Du

    Repression of dMyc expression by Wingless promotes Rbf-induced G 1 arrest in the presumptive Drosophila wing margin

    PNAS 2004 101:3857-3862; published ahead of print March 4, 2004, doi:10.1073/pnas.0400526101

Ecology

  • Biological Sciences - Ecology:
    • Michal Gruntman
    • and Ariel Novoplansky

    From the Cover: Physiologically mediated self/non-self discrimination in roots

    PNAS 2004 101:3863-3867; published ahead of print March 2, 2004, doi:10.1073/pnas.0306604101

Evolution

  • Biological Sciences - Evolution:
    • Martin Fanenbruck,
    • Steffen Harzsch,
    • and Johann Wolfgang Wägele

    From the Cover: The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships

    PNAS 2004 101:3868-3873; published ahead of print March 5, 2004, doi:10.1073/pnas.0306212101
    • See commentary article on page 3723 in issue 11 of volume 101

Immunology

  • Biological Sciences - Immunology:
    • Booki Min,
    • Gilles Foucras,
    • Martin Meier-Schellersheim,
    • and William E. Paul

    Spontaneous proliferation, a response of naïve CD4 T cells determined by the diversity of the memory cell repertoire

    PNAS 2004 101:3874-3879; published ahead of print March 4, 2004, doi:10.1073/pnas.0400606101
  • Biological Sciences - Immunology:
    • Javier Cote-Sierra,
    • Gilles Foucras,
    • Liying Guo,
    • Lynda Chiodetti,
    • Howard A. Young,
    • Jane Hu-Li,
    • Jinfang Zhu,
    • and William E. Paul

    Interleukin 2 plays a central role in Th2 differentiation

    PNAS 2004 101:3880-3885; published ahead of print March 5, 2004, doi:10.1073/pnas.0400339101
  • Biological Sciences - Immunology:
    • Ming Zhang,
    • William G. Austen, Jr.,
    • Isaac Chiu,
    • Elisabeth M. Alicot,
    • Rachel Hung,
    • Minghe Ma,
    • Nicola Verna,
    • Min Xu,
    • Herbert B. Hechtman,
    • Francis D. Moore, Jr.,
    • and Michael C. Carroll

    Identification of a specific self-reactive IgM antibody that initiates intestinal ischemia/reperfusion injury

    PNAS 2004 101:3886-3891; published ahead of print March 3, 2004, doi:10.1073/pnas.0400347101
  • Biological Sciences - Immunology:
    • Mara Gerloni,
    • Marta Rizzi,
    • Paola Castiglioni,
    • and Maurizio Zanetti

    T cell immunity using transgenic B lymphocytes

    PNAS 2004 101:3892-3897; published ahead of print March 2, 2004, doi:10.1073/pnas.0400138101
  • Biological Sciences - Immunology:
    • Yang Yang,
    • Christopher H. Contag,
    • Dean Felsher,
    • Catherine M. Shachaf,
    • Yuan Cao,
    • Leonard A. Herzenberg,
    • Leonore A. Herzenberg,
    • and James W. Tung

    The E47 transcription factor negatively regulates CD5 expression during thymocyte development

    PNAS 2004 101:3898-3902; published ahead of print March 4, 2004, doi:10.1073/pnas.0308764101
  • Biological Sciences - Immunology:
    • Emanuela Castigli,
    • Sumi Scott,
    • Fatma Dedeoglu,
    • Paul Bryce,
    • Haifa Jabara,
    • Atul K. Bhan,
    • Emiko Mizoguchi,
    • and Raif S. Geha

    Impaired IgA class switching in APRIL-deficient mice

    PNAS 2004 101:3903-3908; published ahead of print February 26, 2004, doi:10.1073/pnas.0307348101
  • Biological Sciences - Immunology:
    • Eri Ichikawa,
    • Shigeaki Hida,
    • Yoshiki Omatsu,
    • Susumu Shimoyama,
    • Kazuhiko Takahara,
    • Shinichi Miyagawa,
    • Kayo Inaba,
    • and Shinsuke Taki

    Defective development of splenic and epidermal CD4 + dendritic cells in mice deficient for IFN regulatory factor-2

    PNAS 2004 101:3909-3914; published ahead of print March 2, 2004, doi:10.1073/pnas.0400610101

Medical Sciences

  • Biological Sciences - Medical Sciences:
    • Claudia D. Baldus,
    • Sandya Liyanarachchi,
    • Krzysztof Mrózek,
    • Herbert Auer,
    • Stephan M. Tanner,
    • Martin Guimond,
    • Amy S. Ruppert,
    • Nehad Mohamed,
    • Ramana V. Davuluri,
    • Michael A. Caligiuri,
    • Clara D. Bloomfield,
    • and Albert de la Chapelle

    Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP , ETS2 , and ERG genes

    PNAS 2004 101:3915-3920; published ahead of print March 8, 2004, doi:10.1073/pnas.0400272101
  • Biological Sciences - Medical Sciences:
    • Pavan Reddy,
    • Yoshinobu Maeda,
    • Kevin Hotary,
    • Chen Liu,
    • Leonid L. Reznikov,
    • Charles A. Dinarello,
    • and James L. M. Ferrara

    Histone deacetylase inhibitor suberoylanilide hydroxamic acid reduces acute graft-versus-host disease and preserves graft-versus-leukemia effect

    PNAS 2004 101:3921-3926; published ahead of print March 4, 2004, doi:10.1073/pnas.0400380101
  • Biological Sciences - Medical Sciences:
    • Bärbel Schröfelbauer,
    • Darlene Chen,
    • and Nathaniel R. Landau

    From the Cover: A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)

    PNAS 2004 101:3927-3932; published ahead of print February 20, 2004, doi:10.1073/pnas.0307132101
    • See commentary article on page 3725 in issue 11 of volume 101
  • Biological Sciences - Medical Sciences:
    • David A. Goukassian,
    • Elizabeth Helms,
    • Harry van Steeg,
    • Conny van Oostrom,
    • Jag Bhawan,
    • and Barbara A. Gilchrest

    Topical DNA oligonucleotide therapy reduces UV-induced mutations and photocarcinogenesis in hairless mice

    PNAS 2004 101:3933-3938; published ahead of print March 3, 2004, doi:10.1073/pnas.0306389101
  • Biological Sciences - Medical Sciences:
    • Tong Shi,
    • G. Michael Iverson,
    • Jian C. Qi,
    • Keith A. Cockerill,
    • Matthew D. Linnik,
    • Pamela Konecny,
    • and Steven A. Krilis

    β 2 -Glycoprotein I binds factor XI and inhibits its activation by thrombin and factor XIIa: Loss of inhibition by clipped β 2 -glycoprotein I

    PNAS 2004 101:3939-3944; published ahead of print March 8, 2004, doi:10.1073/pnas.0400281101

Microbiology

  • Biological Sciences - Microbiology:
    • Joanne Thomas,
    • Graham P. Stafford,
    • and Colin Hughes

    Docking of cytosolic chaperone-substrate complexes at the membrane ATPase during flagellar type III protein export

    PNAS 2004 101:3945-3950