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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
October 14, 2003; 100 (21)
Index By Author
Cover Photo
FROM THE COVER
Transcription factor Sp8 in limb development
Tracing a catalytic path from reactants to transition state
Microarrays uncover cooperating transcription regulators (A)
Microarrays uncover cooperating transcription regulators (B)
Kinase mutations and impaired digit development
Phosphorylation enhances capsaicin receptor activation
Commentaries
Commentary
:
Stephen R. Palumbi
Ecological subsidies alter the structure of marine communities
PNAS
2003
100
:
11927
-
11928
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2335832100
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See companion article on page
12229
in issue 21 of volume 100
Commentary
:
Alan Rein
Genetic footprinting of a retroviral Gag gene suggests an important role in virus replication
PNAS
2003
100
:
11929
-
11930
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2135539100
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See companion article on page
11678
in issue 20 of volume 100
Commentary
:
Richard L. Schowen
How an enzyme surmounts the activation energy barrier
PNAS
2003
100
:
11931
-
11932
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2235806100
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See companion article on page
12015
in issue 21 of volume 100
Commentary
:
Michael S. Worden
and
John J. Foxe
The dynamics of the spread of selective visual attention
PNAS
2003
100
:
11933
-
11935
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2135485100
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See companion article on page
11806
in issue 20 of volume 100
Physical Sciences
Applied Mathematics
Select this article
Physical Sciences - Applied Mathematics
:
Richard Blankenbecler
,
Mattias Ohlsson
,
Carsten Peterson
,
and
Markus Ringnér
Matching protein structures with fuzzy alignments
PNAS
2003
100
:
11936
-
11940
;
published ahead of print
October 2, 2003
,
doi:10.1073/pnas.1635048100
Abstract
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Supporting Information
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Physical Sciences - Applied Mathematics
:
Boualem Khouider
,
Andrew J. Majda
,
and
Markos A. Katsoulakis
Coarse-grained stochastic models for tropical convection and climate
PNAS
2003
100
:
11941
-
11946
;
published ahead of print
September 30, 2003
,
doi:10.1073/pnas.1634951100
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Applied Physical Sciences
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Physical Sciences - Applied Physical Sciences
:
Caesar Saloma
,
Gay Jane Perez
,
Giovanni Tapang
,
May Lim
,
and
Cynthia Palmes-Saloma
Self-organized queuing and scale-free behavior in real escape panic
PNAS
2003
100
:
11947
-
11952
;
published ahead of print
September 30, 2003
,
doi:10.1073/pnas.2031912100
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Chemistry
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Physical Sciences - Chemistry
:
X. Huang
,
C. J. Margulis
,
and
B. J. Berne
Dewetting-induced collapse of hydrophobic particles
PNAS
2003
100
:
11953
-
11958
;
published ahead of print
September 24, 2003
,
doi:10.1073/pnas.1934837100
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Physical Sciences - Chemistry
:
Wen Liu
,
Joachim Ahlert
,
Qunjie Gao
,
Evelyn Wendt-Pienkowski
,
Ben Shen
,
and
Jon S. Thorson
Rapid PCR amplification of minimal enediyne polyketide synthase cassettes leads to a predictive familial classification model
PNAS
2003
100
:
11959
-
11963
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.2034291100
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Physical Sciences - Chemistry
:
Nathalie Sordé
,
Gopal Das
,
and
Stefan Matile
Enzyme screening with synthetic multifunctional pores: Focus on biopolymers
PNAS
2003
100
:
11964
-
11969
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2132894100
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Physical Sciences - Chemistry
:
Jonathan R. Nitschke
and
Jean-Marie Lehn
Self-organization by selection: Generation of a metallosupramolecular grid architecture by selection of components in a dynamic library of ligands
PNAS
2003
100
:
11970
-
11974
;
published ahead of print
September 29, 2003
,
doi:10.1073/pnas.1534925100
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
David P. Barondeau
,
Christopher D. Putnam
,
Carey J. Kassmann
,
John A. Tainer
,
and
Elizabeth D. Getzoff
Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures
PNAS
2003
100
:
12111
-
12116
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.2133463100
Abstract
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Geophysics
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Physical Sciences - Geophysics
:
Aaron S. Katzenstein
,
Lambert A. Doezema
,
Isobel J. Simpson
,
Donald R. Blake
,
and
F. Sherwood Rowland
Extensive regional atmospheric hydrocarbon pollution in the southwestern United States
PNAS
2003
100
:
11975
-
11979
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.1635258100
Abstract
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Physics
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Physical Sciences - Physics
:
S. Mangan
and
U. Alon
Structure and function of the feed-forward loop network motif
PNAS
2003
100
:
11980
-
11985
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2133841100
Abstract
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Supporting Tables
Social Sciences
Economic Sciences
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Social Sciences - Economic Sciences
:
Peter Sheridan Dodds
,
Duncan J. Watts
,
and
Charles F. Sabel
Information exchange and the robustness of organizational networks
PNAS
2003
100
:
12516
-
12521
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.1534702100
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Biological Sciences
Agricultural Sciences
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Biological Sciences - Agricultural Sciences
:
Tetsuro Shinoda
and
Kyo Itoyama
Juvenile hormone acid methyltransferase: A key regulatory enzyme for insect metamorphosis
PNAS
2003
100
:
11986
-
11991
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2134232100
Abstract
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Anthropology
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Biological Sciences - Anthropology
:
J. M. Bermúdez de Castro
,
M. Martinón-Torres
,
S. Sarmiento
,
M. Lozano
,
J. L. Arsuaga
,
and
E. Carbonell
Rates of anterior tooth wear in Middle Pleistocene hominins from Sima de los Huesos (Sierra de Atapuerca, Spain)
PNAS
2003
100
:
11992
-
11996
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.2034879100
Abstract
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Applied Biological Sciences
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Biological Sciences - Applied Biological Sciences
:
Siyuan Tan
,
Dmitry Guschin
,
Albert Davalos
,
Ya-Li Lee
,
Andrew W. Snowden
,
Yann Jouvenot
,
H. Steven Zhang
,
Katherine Howes
,
Andrew R. McNamara
,
Albert Lai
,
Chris Ullman
,
Lindsey Reynolds
,
Michael Moore
,
Mark Isalan
,
Lutz-Peter Berg
,
Bradley Campos
,
Hong Qi
,
S. Kaye Spratt
,
Casey C. Case
,
Carl O. Pabo
,
Judith Campisi
,
and
Philip D. Gregory
Zinc-finger protein-targeted gene regulation: Genomewide single-gene specificity
PNAS
2003
100
:
11997
-
12002
;
published ahead of print
September 26, 2003
,
doi:10.1073/pnas.2035056100
Abstract
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Biochemistry
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Biological Sciences - Biochemistry
:
Greg T. Cantin
,
Jennitte L. Stevens
,
and
Arnold J. Berk
Activation domain–mediator interactions promote transcription preinitiation complex assembly on promoter DNA
PNAS
2003
100
:
12003
-
12008
;
published ahead of print
September 23, 2003
,
doi:10.1073/pnas.2035253100
Abstract
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Biological Sciences - Biochemistry
:
Laëtitia K. Linares
,
Arnd Hengstermann
,
Aaron Ciechanover
,
Stefan Müller
,
and
Martin Scheffner
HdmX stimulates Hdm2-mediated ubiquitination and degradation of p53
PNAS
2003
100
:
12009
-
12014
;
published ahead of print
September 24, 2003
,
doi:10.1073/pnas.2030930100
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Supporting Information
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Biological Sciences - Biochemistry
:
Sun Hur
and
Thomas C. Bruice
From the Cover: The near attack conformation approach to the study of the chorismate to prephenate reaction
PNAS
2003
100
:
12015
-
12020
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.1534873100
Abstract
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Supporting Infomation
See commentary article on page
11931
in issue 21 of volume 100
Select this article
Biological Sciences - Biochemistry
:
Valeria Menchise
,
Giuseppina De Simone
,
Tullia Tedeschi
,
Roberto Corradini
,
Stefano Sforza
,
Rosangela Marchelli
,
Domenica Capasso
,
Michele Saviano
,
and
Carlo Pedone
Insights into peptide nucleic acid (PNA) structural features: The crystal structure of a d -lysine-based chiral PNA–DNA duplex
PNAS
2003
100
:
12021
-
12026
;
published ahead of print
September 25, 2003
,
doi:10.1073/pnas.2034746100
Abstract
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Biological Sciences - Biochemistry
:
Jay D. Horton
,
Nila A. Shah
,
Janet A. Warrington
,
Norma N. Anderson
,
Sahng Wook Park
,
Michael S. Brown
,
and
Joseph L. Goldstein
Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes
PNAS
2003
100
:
12027
-
12032
;
published ahead of print
September 25, 2003
,
doi:10.1073/pnas.1534923100
Abstract
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Supporting Information
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Biological Sciences - Biochemistry
:
Shu He
,
David Bauman
,
Jamaine S. Davis
,
Alejandra Loyola
,
Kenichi Nishioka
,
Jennifer L. Gronlund
,
Danny Reinberg
,
Fanyu Meng
,
Neil Kelleher
,
and
Dewey G. McCafferty
Facile synthesis of site-specifically acetylated and methylated histone proteins: Reagents for evaluation of the histone code hypothesis
PNAS
2003
100
:
12033
-
12038
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2035256100
Abstract
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Supporting Text
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Biological Sciences - Biochemistry
:
Ermanno Gherardi
,
Mark E. Youles
,
Ricardo N. Miguel
,
Tom L. Blundell
,
Luisa Iamele
,
Julian Gough
,
Abhishek Bandyopadhyay
,
Guido Hartmann
,
and
P. Jonathan G. Butler
Functional map and domain structure of MET, the product of the c- met protooncogene and receptor for hepatocyte growth factor/scatter factor
PNAS
2003
100
:
12039
-
12044
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.2034936100
Abstract
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Supporting Table
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Biological Sciences - Biochemistry
:
Pam Tangvoranuntakul
,
Pascal Gagneux
,
Sandra Diaz
,
Muriel Bardor
,
Nissi Varki
,
Ajit Varki
,
and
Elaine Muchmore
Human uptake and incorporation of an immunogenic nonhuman dietary sialic acid
PNAS
2003
100
:
12045
-
12050
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.2131556100
Abstract
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Supporting Information
Online Correction to Supporting Table 2
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Biological Sciences - Biochemistry
:
Alireza R. Rezaie
and
Likui Yang
Thrombomodulin allosterically modulates the activity of the anticoagulant thrombin
PNAS
2003
100
:
12051
-
12056
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.2135346100
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Biological Sciences - Biochemistry
:
Frank J. Grundy
,
Susan C. Lehman
,
and
Tina M. Henkin
The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes
PNAS
2003
100
:
12057
-
12062
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.2133705100
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Biological Sciences - Biochemistry
:
Timothy P. Best
,
Benjamin S. Edelson
,
Nicholas G. Nickols
,
and
Peter B. Dervan
Nuclear localization of pyrrole–imidazole polyamide–fluorescein conjugates in cell culture
PNAS
2003
100
:
12063
-
12068
;
published ahead of print
September 30, 2003
,
doi:10.1073/pnas.2035074100
Abstract
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Biological Sciences - Biochemistry
:
Bishwajit Kundu
,
Nilesh R. Maiti
,
Eric M. Jones
,
Krystyna A. Surewicz
,
David L. Vanik
,
and
Witold K. Surewicz
Nucleation-dependent conformational conversion of the Y145Stop variant of human prion protein: Structural clues for prion propagation
PNAS
2003
100
:
12069
-
12074
;
published ahead of print
September 30, 2003
,
doi:10.1073/pnas.2033281100
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Biological Sciences - Biochemistry
:
Nicole Poulsen
,
Manfred Sumper
,
and
Nils Kröger
Biosilica formation in diatoms: Characterization of native silaffin-2 and its role in silica morphogenesis
PNAS
2003
100
:
12075
-
12080
;
published ahead of print
September 24, 2003
,
doi:10.1073/pnas.2035131100
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Biological Sciences - Biochemistry
:
Erwin van Dijk
,
Hervé Le Hir
,
and
Bertrand Séraphin
DcpS can act in the 5′–3′ mRNA decay pathway in addition to the 3′–5′ pathway
PNAS
2003
100
:
12081
-
12086
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.1635192100
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Biological Sciences - Biochemistry
:
Angela Fago
,
Alvin L. Crumbliss
,
Jim Peterson
,
Linda L. Pearce
,
and
Celia Bonaventura
The case of the missing NO– hemoglobin: Spectral changes suggestive of heme redox reactions reflect changes in NO– heme geometry
PNAS
2003
100
:
12087
-
12092
;
published ahead of print
September 26, 2003
,
doi:10.1073/pnas.2032603100
Abstract
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Biological Sciences - Biochemistry
:
M. Todd Washington
,
Louise Prakash
,
and
Satya Prakash
Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase η
PNAS
2003
100
:
12093
-
12098
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.2134223100
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Biophysics
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Biological Sciences - Biophysics
:
Robert K. Adair
Noise and stochastic resonance in voltage-gated ion channels
PNAS
2003
100
:
12099
-
12104
;
published ahead of print
September 23, 2003
,
doi:10.1073/pnas.2034447100
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Biological Sciences - Biophysics
:
Jens Meiler
and
David Baker
Coupled prediction of protein secondary and tertiary structure
PNAS
2003
100
:
12105
-
12110
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.1831973100
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Physical Sciences - Chemistry - Biological Sciences - Biophysics
:
David P. Barondeau
,
Christopher D. Putnam
,
Carey J. Kassmann
,
John A. Tainer
,
and
Elizabeth D. Getzoff
Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures
PNAS
2003
100
:
12111
-
12116
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.2133463100
Abstract
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Biological Sciences - Biophysics
:
Mourad Sadqi
,
Lisa J. Lapidus
,
and
Victor Muñoz
How fast is protein hydrophobic collapse?
PNAS
2003
100
:
12117
-
12122
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.2033863100
Abstract
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Biological Sciences - Biophysics
:
Victor Spirin
and
Leonid A. Mirny
Protein complexes and functional modules in molecular networks
PNAS
2003
100
:
12123
-
12128
;
published ahead of print
September 29, 2003
,
doi:10.1073/pnas.2032324100
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Biological Sciences - Biophysics
:
Peter G. Bolhuis
Transition-path sampling of β-hairpin folding
PNAS
2003
100
:
12129
-
12134
;
published ahead of print
October 1, 2003
,
doi:10.1073/pnas.1534924100
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Biological Sciences - Biophysics
:
Bertil Halle
and
Monika Davidovic
Biomolecular hydration: From water dynamics to hydrodynamics
PNAS
2003
100
:
12135
-
12140
;
published ahead of print
October 3, 2003
,
doi:10.1073/pnas.2033320100
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Biological Sciences - Biophysics
:
Adam E. Cohen
and
L. Mahadevan
Kinks, rings, and rackets in filamentous structures
PNAS
2003
100
:
12141
-
12146
;
published ahead of print
October 6, 2003
,
doi:10.1073/pnas.1534600100
Abstract
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Cell Biology
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Biological Sciences - Cell Biology
:
Vadim Iourgenko
,
Wenjun Zhang
,
Craig Mickanin
,
Ira Daly
,
Can Jiang
,
Jonathan M. Hexham
,
Anthony P. Orth
,
Loren Miraglia
,
Jodi Meltzer
,
Dan Garza
,
Gung-Wei Chirn
,
Elizabeth McWhinnie
,
Dalia Cohen
,
Joanne Skelton
,
Robert Terry
,
Yang Yu
,
Dale Bodian
,
Frank P. Buxton
,
Jian Zhu
,
Chuanzheng Song
,
and
Mark A. Labow