Table of Contents

Commentaries

Commentary:
- Oscar Fernandez-Capetillo
- and Andre Nussenzweig
Linking histone deacetylation with the repair of DNA breaks
PNAS 2004 101:1427-1428; published online before print February 2, 2004, doi:10.1073/pnas.0307342101
- See companion article on page 1644 in issue 6 of volume 101
Commentary:
- Jerry L. Workman
- and Susan M. Abmayr
Histone H3 variants and modifications on transcribed genes
PNAS 2004 101:1429-1430; published online before print February 2, 2004, doi:10.1073/pnas.0308506101
- See companion article on page 1525 in issue 6 of volume 101
Commentary:
- Thomas H. Söllner
A mutation in the general membrane trafficking machinery and hydrocephaly
PNAS 2004 101:1431-1432; published online before print February 2, 2004, doi:10.1073/pnas.0308601101
- See companion article on page 1748 in issue 6 of volume 101

Physical Sciences

Chemistry

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Physical Sciences - Chemistry:
- Isabella L. Karle,
- Haruhiko Yagi,
- Jane M. Sayer,
- and Donald M. Jerina
Crystal and molecular structure of a benzo[a]pyrene 7,8-diol 9,10-epoxide N²-deoxyguanosine adduct: Absolute configuration and conformation
PNAS 2004 101:1433-1438; published online before print February 2, 2004, doi:10.1073/pnas.0307305101

Physics

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Physical Sciences - Physics:
- Matteo Marsili,
- Fernando Vega-Redondo,
- and František Slanina
The rise and fall of a networked society: A formal model
PNAS 2004 101:1439-1442; published online before print January 26, 2004, doi:10.1073/pnas.0305684101

Social Sciences

Anthropology

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Biological Sciences - Anthropology - Social Sciences - Anthropology:
- Virginia J. Vitzthum,
- Hilde Spielvogel,
- and Jonathan Thornburg
Interpopulational differences in progesterone levels during conception and implantation in humans
PNAS 2004 101:1443-1448; published online before print February 2, 2004, doi:10.1073/pnas.0302640101

Biological Sciences

Anthropology

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Biological Sciences - Anthropology - Social Sciences - Anthropology:
- Virginia J. Vitzthum,
- Hilde Spielvogel,
- and Jonathan Thornburg
Interpopulational differences in progesterone levels during conception and implantation in humans
PNAS 2004 101:1443-1448; published online before print February 2, 2004, doi:10.1073/pnas.0302640101

Biophysics

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Biological Sciences - Biophysics:
- Mark A. Wilson,
- Courtney V. St. Amour,
- Jennifer L. Collins,
- Dagmar Ringe,
- and Gregory A. Petsko
The 1.8-Å resolution crystal structure of YDR533Cp from Saccharomyces cerevisiae: A member of the DJ-1/ThiJ/PfpI superfamily
PNAS 2004 101:1531-1536; published online before print January 26, 2004, doi:10.1073/pnas.0308089100
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Biological Sciences - Biophysics:
- James Holton
- and Tom Alber
From the Cover: Automated protein crystal structure determination using elves
PNAS 2004 101:1537-1542; published online before print January 29, 2004, doi:10.1073/pnas.0306241101
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Biological Sciences - Biophysics:
- Masanori Arita
The metabolic world of Escherichia coli is not small
PNAS 2004 101:1543-1547; published online before print February 2, 2004, doi:10.1073/pnas.0306458101

Cell Biology

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Biological Sciences - Cell Biology:
- Sonia Terrillon,
- Claude Barberis,
- and Michel Bouvier
Heterodimerization of V1a and V2 vasopressin receptors determines the interaction with β-arrestin and their trafficking patterns
PNAS 2004 101:1548-1553; published online before print February 2, 2004, doi:10.1073/pnas.0305322101
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Biological Sciences - Cell Biology:
- Charles R. Keese,
- Joachim Wegener,
- Sarah R. Walker,
- and Ivar Giaever
Electrical wound-healing assay for cells in vitro
PNAS 2004 101:1554-1559; published online before print January 27, 2004, doi:10.1073/pnas.0307588100
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Biological Sciences - Cell Biology:
- Micsunica Platica,
- Elena Ivan,
- James F. Holland,
- Alin Ionescu,
- Sheryl Chen,
- John Mandeli,
- Pamela D. Unger,
- and Ovidiu Platica
A pituitary gene encodes a protein that produces differentiation of breast and prostate cancer cells
PNAS 2004 101:1560-1565; published online before print January 26, 2004, doi:10.1073/pnas.0307829100
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Biological Sciences - Cell Biology:
- Anders Ström,
- Johan Hartman,
- James S. Foster,
- Silke Kietz,
- Jay Wimalasena,
- and Jan-Åke Gustafsson
Estrogen receptor β inhibits 17β-estradiol-stimulated proliferation of the breast cancer cell line T47D
PNAS 2004 101:1566-1571; published online before print January 26, 2004, doi:10.1073/pnas.0308319100
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Biological Sciences - Cell Biology:
- Hisao Moriya
- and Mark Johnston
Glucose sensing and signaling in Saccharomyces cerevisiae through the Rgt2 glucose sensor and casein kinase I
PNAS 2004 101:1572-1577; published online before print January 30, 2004, doi:10.1073/pnas.0305901101
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Biological Sciences - Cell Biology:
- Luc de Haro,
- Géraldine Ferracci,
- Sandrine Opi,
- Cécile Iborra,
- Stéphanie Quetglas,
- Raymond Miquelis,
- Christian Lévêque,
- and Michael Seagar
Ca²⁺/calmodulin transfers the membrane-proximal lipid-binding domain of the v-SNARE synaptobrevin from cis to trans bilayers
PNAS 2004 101:1578-1583; published online before print February 2, 2004, doi:10.1073/pnas.0303274101
Select this article
Biological Sciences - Cell Biology:
- Michelle Piehl,
- U. Serdar Tulu,
- Pat Wadsworth,
- and Lynne Cassimeris
Centrosome maturation: Measurement of microtubule nucleation throughout the cell cycle by using GFP-tagged EB1
PNAS 2004 101:1584-1588; published online before print January 27, 2004, doi:10.1073/pnas.0308205100
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Biological Sciences - Cell Biology:
- Laura P. Zanello
- and Anthony W. Norman
Rapid modulation of osteoblast ion channel responses by 1α,25(OH)₂-vitamin D₃ requires the presence of a functional vitamin D nuclear receptor
PNAS 2004 101:1589-1594; published online before print February 2, 2004, doi:10.1073/pnas.0305802101

Developmental Biology

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Biological Sciences - Developmental Biology:
- David J. Ecker,
- Paula Stein,
- Zhe Xu,
- Carmen J. Williams,
- Gregory S. Kopf,
- Warren B. Bilker,
- Ted Abel,
- and Richard M. Schultz
Long-term effects of culture of preimplantation mouse embryos on behavior
PNAS 2004 101:1595-1600; published online before print January 27, 2004, doi:10.1073/pnas.0306846101
Select this article
Biological Sciences - Developmental Biology:
- Guenther E. Roth,
- Mathias S. Gierl,
- Lars Vollborn,
- Martin Meise,
- Ruth Lintermann,
- and Guenter Korge
The Drosophila gene Start1: A putative cholesterol transporter and key regulator of ecdysteroid synthesis
PNAS 2004 101:1601-1606; published online before print January 26, 2004, doi:10.1073/pnas.0308212100

Ecology

Select this article
Biological Sciences - Ecology:
- Jorge A. Zavala,
- Aparna G. Patankar,
- Klaus Gase,
- and Ian T. Baldwin
Constitutive and inducible trypsin proteinase inhibitor production incurs large fitness costs in Nicotiana attenuata
PNAS 2004 101:1607-1612; published online before print February 2, 2004, doi:10.1073/pnas.0305096101
Select this article
Biological Sciences - Ecology:
- Marianne S. V. Douglas,
- John P. Smol,
- James M. Savelle,
- and Jules M. Blais
Prehistoric Inuit whalers affected Arctic freshwater ecosystems
PNAS 2004 101:1613-1617; published online before print January 26, 2004, doi:10.1073/pnas.0307570100

Evolution

Select this article
Biological Sciences - Evolution:
- Jessica L. Mark Welch,
- David B. Mark Welch,
- and Matthew Meselson
From the Cover: Cytogenetic evidence for asexual evolution of bdelloid rotifers
PNAS 2004 101:1618-1621; published online before print January 27, 2004, doi:10.1073/pnas.0307677100
- See commentary article on page 2651 in issue 9 of volume 101
Select this article
Biological Sciences - Evolution:
- David B. Mark Welch,
- Michael P. Cummings,
- David M. Hillis,
- and Matthew Meselson
From the Cover: Divergent gene copies in the asexual class Bdelloidea (Rotifera) separated before the bdelloid radiation or within bdelloid families
PNAS 2004 101:1622-1625; published online before print January 27, 2004, doi:10.1073/pnas.2136686100
- See commentary article on page 2651 in issue 9 of volume 101
Select this article
Biological Sciences - Evolution:
- Todd A. Schlenke
- and David J. Begun
Strong selective sweep associated with a transposon insertion in Drosophila simulans
PNAS 2004 101:1626-1631; published online before print January 26, 2004, doi:10.1073/pnas.0303793101
Select this article
Biological Sciences - Evolution:
- Geraldine Butler,
- Claire Kenny,
- Ailís Fagan,
- Cornelia Kurischko,
- Claude Gaillardin,
- and Kenneth H. Wolfe
Evolution of the MAT locus and its Ho endonuclease in yeast species
PNAS 2004 101:1632-1637; published online before print January 26, 2004, doi:10.1073/pnas.0304170101
Select this article
Biological Sciences - Evolution:
- Klaas Vandepoele,
- Wouter De Vos,
- John S. Taylor,
- Axel Meyer,
- and Yves Van de Peer
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
PNAS 2004 101:1638-1643; published online before print February 2, 2004, doi:10.1073/pnas.0307968100

Genetics

Select this article
Biological Sciences - Genetics:
- Ali Jazayeri,
- Andrew D. McAinsh,
- and Stephen P. Jackson
Saccharomyces cerevisiae Sin3p facilitates DNA double-strand break repair
PNAS 2004 101:1644-1649; published online before print January 7, 2004, doi:10.1073/pnas.0304797101
- See commentary article on page 1427 in issue 6 of volume 101
Select this article
Biological Sciences - Genetics:
- Byung Joon Hwang,
- Hans-Michael Müller,
- and Paul W. Sternberg
Genome annotation by high-throughput 5′ RNA end determination
PNAS 2004 101:1650-1655

FROM THE COVER

Linking histone deacetylation with the repair of DNA breaks

Histone H3 variants and modifications on transcribed genes

A mutation in the general membrane trafficking machinery and hydrocephaly

Crystal and molecular structure of a benzo[a]pyrene 7,8-diol 9,10-epoxide N2-deoxyguanosine adduct: Absolute configuration and conformation

The rise and fall of a networked society: A formal model

Interpopulational differences in progesterone levels during conception and implantation in humans

Interpopulational differences in progesterone levels during conception and implantation in humans

Freeze-frame inhibitor captures acetylcholinesterase in a unique conformation

Functional reclassification of the putative cinnamyl alcohol dehydrogenase multigene family in Arabidopsis

Heme regulates the dynamic exchange of Bach1 and NF-E2-related factors in the Maf transcription factor network

Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme

Herpes simplex virus infections are arrested in Oct-1-deficient cells

NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: Implications for KaiA–KaiC interaction

Protein phosphorylation can regulate metabolite concentrations rather than control flux: The example of glycogen synthase

Molecular dissection of the roles of nucleotide binding and hydrolysis in dynein's AAA domains in Saccharomyces cerevisiae

Folate synthesis in plants: The p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids

Stabilities of folding of clustered, two-repeat fragments of spectrin reveal a potential hinge in the human erythroid spectrin tetramer

Elucidation of signaling properties of vasopressin receptor-related receptor 1 by using the chimeric receptor approach

Evidence that vaccinia virulence factor E3L binds to Z-DNA in vivo: Implications for development of a therapy for poxvirus infection

In vitro synthesis of fully functional EmrE, a multidrug transporter, and study of its oligomeric state

From the Cover: Histone H3.3 is enriched in covalent modifications associated with active chromatin

The 1.8-Å resolution crystal structure of YDR533Cp from Saccharomyces cerevisiae: A member of the DJ-1/ThiJ/PfpI superfamily

From the Cover: Automated protein crystal structure determination using elves

The metabolic world of Escherichia coli is not small

Heterodimerization of V1a and V2 vasopressin receptors determines the interaction with β-arrestin and their trafficking patterns

Electrical wound-healing assay for cells in vitro

A pituitary gene encodes a protein that produces differentiation of breast and prostate cancer cells

Estrogen receptor β inhibits 17β-estradiol-stimulated proliferation of the breast cancer cell line T47D

Glucose sensing and signaling in Saccharomyces cerevisiae through the Rgt2 glucose sensor and casein kinase I

Ca2+/calmodulin transfers the membrane-proximal lipid-binding domain of the v-SNARE synaptobrevin from cis to trans bilayers

Centrosome maturation: Measurement of microtubule nucleation throughout the cell cycle by using GFP-tagged EB1

Rapid modulation of osteoblast ion channel responses by 1α,25(OH)2-vitamin D3 requires the presence of a functional vitamin D nuclear receptor

Long-term effects of culture of preimplantation mouse embryos on behavior

The Drosophila gene Start1: A putative cholesterol transporter and key regulator of ecdysteroid synthesis

Constitutive and inducible trypsin proteinase inhibitor production incurs large fitness costs in Nicotiana attenuata

Prehistoric Inuit whalers affected Arctic freshwater ecosystems

From the Cover: Cytogenetic evidence for asexual evolution of bdelloid rotifers

From the Cover: Divergent gene copies in the asexual class Bdelloidea (Rotifera) separated before the bdelloid radiation or within bdelloid families

Strong selective sweep associated with a transposon insertion in Drosophila simulans

Evolution of the MAT locus and its Ho endonuclease in yeast species

Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates

Saccharomyces cerevisiae Sin3p facilitates DNA double-strand break repair

Genome annotation by high-throughput 5′ RNA end determination

Crystal and molecular structure of a benzo[a]pyrene 7,8-diol 9,10-epoxide N²-deoxyguanosine adduct: Absolute configuration and conformation

Ca²⁺/calmodulin transfers the membrane-proximal lipid-binding domain of the v-SNARE synaptobrevin from cis to trans bilayers

Rapid modulation of osteoblast ion channel responses by 1α,25(OH)₂-vitamin D₃ requires the presence of a functional vitamin D nuclear receptor