Commentary

  • Commentary:
    • Kyeongeun Lee
    • and Vineet N. KewalRamani

    From the Cover: In defense of the cell: TRIM5α interception of mammalian retroviruses

    PNAS 2004 101:10496-10497; published online before print July 13, 2004, doi:10.1073/pnas.0404066101
    • See companion article on page 10786 in issue 29 of volume 101
    • See companion article on page 10774 in issue 29 of volume 101
    • See companion article on page 10780 in issue 29 of volume 101

Editorial

  • Editorial:
    • Nicholas R. Cozzarelli

    Responsible authorship of papers in PNAS

    PNAS 2004 101:10495; published online before print July 12, 2004, doi:10.1073/pnas.0404563101

Physical Sciences

Applied Physical Sciences

  • Physical Sciences - Applied Physical Sciences:
    • Viktor A. Podolskiy,
    • Evgenii Narimanov,
    • Wei Fang,
    • and Hui Cao

    From the Cover: Chaotic microlasers based on dynamical localization

    PNAS 2004 101:10498-10500; published online before print July 12, 2004, doi:10.1073/pnas.0402805101
  • Physical Sciences - Applied Physical Sciences:
    • Robert T. Krivacic,
    • Andras Ladanyi,
    • Douglas N. Curry,
    • H. B. Hsieh,
    • Peter Kuhn,
    • Danielle E. Bergsrud,
    • Jane F. Kepros,
    • Todd Barbera,
    • Michael Y. Ho,
    • Lan Bo Chen,
    • Richard A. Lerner,
    • and Richard H. Bruce

    A rare-cell detector for cancer

    PNAS 2004 101:10501-10504; published online before print July 12, 2004, doi:10.1073/pnas.0404036101

Chemistry

  • Physical Sciences - Chemistry - Biological Sciences - Biochemistry:
    • Allen R. Buskirk,
    • Yi-Ching Ong,
    • Zev J. Gartner,
    • and David R. Liu

    Directed evolution of ligand dependence: Small-molecule-activated protein splicing

    PNAS 2004 101:10505-10510; published online before print July 9, 2004, doi:10.1073/pnas.0402762101
  • Physical Sciences - Chemistry:
    • Sarah Delaney,
    • Jae Yoo,
    • Eric D. A. Stemp,
    • and Jacqueline K. Barton

    Charge equilibration between two distinct sites in double helical DNA

    PNAS 2004 101:10511-10516; published online before print July 9, 2004, doi:10.1073/pnas.0403791101
  • Physical Sciences - Chemistry:
    • Heather A. Fogarty,
    • Roman Imhof,
    • and Josef Michl

    From the Cover: Magnetic circular dichroism of peralkylated tetrasilane conformers

    PNAS 2004 101:10517-10522; published online before print July 12, 2004, doi:10.1073/pnas.0403209101

Computer Sciences

  • Physical Sciences - Computer Sciences - Biological Sciences - Cell Biology:
    • Eric P. Xing
    • and Richard M. Karp

    MotifPrototyper: A Bayesian profile model for motif families

    PNAS 2004 101:10523-10528; published online before print July 13, 2004, doi:10.1073/pnas.0403564101

Statistics

  • Physical Sciences - Statistics:
    • Jing Huang,
    • Alfred Lin,
    • Balasubramanian Narasimhan,
    • Thomas Quertermous,
    • C. Agnes Hsiung,
    • Low-Tone Ho,
    • John S. Grove,
    • Michael Olivier,
    • Koustubh Ranade,
    • Neil J. Risch,
    • and Richard A. Olshen

    Tree-structured supervised learning and the genetics of hypertension

    PNAS 2004 101:10529-10534; published online before print July 12, 2004, doi:10.1073/pnas.0403794101

Biological Sciences

Agricultural Sciences

  • Biological Sciences - Agricultural Sciences:
    • Vinod Kumar,
    • Douglas J. Mills,
    • James D. Anderson,
    • and Autar K. Mattoo

    An alternative agriculture system is defined by a distinct expression profile of select gene transcripts and proteins

    PNAS 2004 101:10535-10540; published online before print July 12, 2004, doi:10.1073/pnas.0403496101

Anthropology

  • Biological Sciences - Anthropology:
    • Adrienne Zihlman,
    • Debra Bolter,
    • and Christophe Boesch

    Wild chimpanzee dentition and its implications for assessing life history in immature hominin fossils

    PNAS 2004 101:10541-10543; published online before print July 8, 2004, doi:10.1073/pnas.0402635101

Biochemistry

  • Physical Sciences - Chemistry - Biological Sciences - Biochemistry:
    • Allen R. Buskirk,
    • Yi-Ching Ong,
    • Zev J. Gartner,
    • and David R. Liu

    Directed evolution of ligand dependence: Small-molecule-activated protein splicing

    PNAS 2004 101:10505-10510; published online before print July 9, 2004, doi:10.1073/pnas.0402762101
  • Biological Sciences - Biochemistry:
    • Dmitry Zaslavsky,
    • Robert C. Sadoski,
    • Sany Rajagukguk,
    • Lois Geren,
    • Francis Millett,
    • Bill Durham,
    • and Robert B. Gennis

    Direct measurement of proton release by cytochrome c oxidase in solution during the F→O transition

    PNAS 2004 101:10544-10547; published online before print July 9, 2004, doi:10.1073/pnas.0401521101
  • Biological Sciences - Biochemistry:
    • Janice D. Pata,
    • William G. Stirtan,
    • Steven W. Goldstein,
    • and Thomas A. Steitz

    Structure of HIV-1 reverse transcriptase bound to an inhibitor active against mutant reverse transcriptases resistant to other nonnucleoside inhibitors

    PNAS 2004 101:10548-10553; published online before print July 12, 2004, doi:10.1073/pnas.0404151101
  • Biological Sciences - Biochemistry:
    • Takeharu Nagai,
    • Shuichi Yamada,
    • Takashi Tominaga,
    • Michinori Ichikawa,
    • and Atsushi Miyawaki

    Expanded dynamic range of fluorescent indicators for Ca2+ by circularly permuted yellow fluorescent proteins

    PNAS 2004 101:10554-10559; published online before print July 9, 2004, doi:10.1073/pnas.0400417101
  • Biological Sciences - Biochemistry:
    • Martin J. Richer,
    • Clairessa A. Keays,
    • Jennifer Waterhouse,
    • Jessey Minhas,
    • Carl Hashimoto,
    • and François Jean

    The Spn4 gene of Drosophila encodes a potent furin-directed secretory pathway serpin

    PNAS 2004 101:10560-10565; published online before print July 9, 2004, doi:10.1073/pnas.0401406101
  • Biological Sciences - Biochemistry:
    • Masahiro Ito,
    • Haoxing Xu,
    • Arthur A. Guffanti,
    • Yi Wei,
    • Lior Zvi,
    • David E. Clapham,
    • and Terry A. Krulwich

    The voltage-gated Na+ channel NaVBP has a role in motility, chemotaxis, and pH homeostasis of an alkaliphilic Bacillus

    PNAS 2004 101:10566-10571; published online before print July 8, 2004, doi:10.1073/pnas.0402692101
  • Biological Sciences - Biochemistry:
    • Yi-Kai Chen,
    • Chih-Hsiang Leng,
    • Heidi Olivares,
    • Ming-Hui Lee,
    • Yuan-Chih Chang,
    • Wen-Mei Kung,
    • Shih-Chieh Ti,
    • Yu-Hui Lo,
    • Andrew H.-J. Wang,
    • Chia-Seng Chang,
    • Douglas K. Bishop,
    • Yi-Ping Hsueh,
    • and Ting-Fang Wang

    Heterodimeric complexes of Hop2 and Mnd1 function with Dmc1 to promote meiotic homolog juxtaposition and strand assimilation

    PNAS 2004 101:10572-10577; published online before print July 12, 2004, doi:10.1073/pnas.0404195101
  • Biological Sciences - Biochemistry:
    • Kenji Nishio,
    • Patricia J. Anderson,
    • X. Long Zheng,
    • and J. Evan Sadler

    Binding of platelet glycoprotein Ibα to von Willebrand factor domain A1 stimulates the cleavage of the adjacent domain A2 by ADAMTS13

    PNAS 2004 101:10578-10583; published online before print July 12, 2004, doi:10.1073/pnas.0402041101

Biophysics

  • Biological Sciences - Biophysics:
    • Magdalena I. Ivanova,
    • Michael R. Sawaya,
    • Mari Gingery,
    • Antoine Attinger,
    • and David Eisenberg

    An amyloid-forming segment of β2-microglobulin suggests a molecular model for the fibril

    PNAS 2004 101:10584-10589; published online before print July 12, 2004, doi:10.1073/pnas.0403756101

Cell Biology

  • Physical Sciences - Computer Sciences - Biological Sciences - Cell Biology:
    • Eric P. Xing
    • and Richard M. Karp

    MotifPrototyper: A Bayesian profile model for motif families

    PNAS 2004 101:10523-10528; published online before print July 13, 2004, doi:10.1073/pnas.0403564101
  • Biological Sciences - Cell Biology:
    • Karl J. A. McCullagh,
    • Elisa Calabria,
    • Giorgia Pallafacchina,
    • Stefano Ciciliot,
    • Antonio L. Serrano,
    • Carla Argentini,
    • John M. Kalhovde,
    • Terje Lømo,
    • and Stefano Schiaffino

    NFAT is a nerve activity sensor in skeletal muscle and controls activity-dependent myosin switching

    PNAS 2004 101:10590-10595; published online before print July 9, 2004, doi:10.1073/pnas.0308035101
  • Biological Sciences - Cell Biology:
    • Wuxing Li,
    • Changbin Chen,
    • Ullrich Markmann-Mulisch,
    • Ljudmilla Timofejeva,
    • Elmon Schmelzer,
    • Hong Ma,
    • and Bernd Reiss

    The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis

    PNAS 2004 101:10596-10601; published online before print July 12, 2004, doi:10.1073/pnas.0404110101
  • Biological Sciences - Cell Biology:
    • Tobias N. Dechow,
    • Laura Pedranzini,
    • Andrea Leitch,
    • Kenneth Leslie,
    • William L. Gerald,
    • Irina Linkov,
    • and Jacqueline F. Bromberg

    Requirement of matrix metalloproteinase-9 for the transformation of human mammary epithelial cells by Stat3-C

    PNAS 2004 101:10602-10607; published online before print July 12, 2004, doi:10.1073/pnas.0404100101
  • Biological Sciences - Cell Biology:
    • Malgorzata Borowiak,
    • Alistair N. Garratt,
    • Torsten Wüstefeld,
    • Michael Strehle,
    • Christian Trautwein,
    • and Carmen Birchmeier

    Met provides essential signals for liver regeneration

    PNAS 2004 101:10608-10613; published online before print July 12, 2004, doi:10.1073/pnas.0403412101
  • Biological Sciences - Cell Biology:
    • Paramasivam Natarajan,
    • Jiyi Wang,
    • Zhaolin Hua,
    • and Todd R. Graham

    Drs2p-coupled aminophospholipid translocase activity in yeast Golgi membranes and relationship to in vivo function

    PNAS 2004 101:10614-10619; published online before print July 12, 2004, doi:10.1073/pnas.0404146101

Developmental Biology

  • Biological Sciences - Developmental Biology:
    • Noora Kotaja,
    • Dario De Cesare,
    • Betina Macho,
    • Lucia Monaco,
    • Stefano Brancorsini,
    • Ellen Goossens,
    • Herman Tournaye,
    • Anne Gansmuller,
    • and Paolo Sassone-Corsi

    Abnormal sperm in mice with targeted deletion of the act (activator of cAMP-responsive element modulator in testis) gene

    PNAS 2004 101:10620-10625; published online before print July 9, 2004, doi:10.1073/pnas.0401947101
  • Biological Sciences - Developmental Biology:
    • Immo A. Hansen,
    • Geoffrey M. Attardo,
    • Jong-Hwa Park,
    • Quan Peng,
    • and Alexander S. Raikhel

    From the Cover: Target of rapamycin-mediated amino acid signaling in mosquito anautogeny

    PNAS 2004 101:10626-10631; published online before print June 30, 2004, doi:10.1073/pnas.0403460101

Ecology

  • Biological Sciences - Ecology:
    • Nils Chr. Stenseth,
    • Amir Shabbar,
    • Kung-Sik Chan,
    • Stan Boutin,
    • Eli Knispel Rueness,
    • Dorothee Ehrich,
    • James W. Hurrell,
    • Ole Chr. Lingjærde,
    • and Kjetill S. Jakobsen

    Snow conditions may create an invisible barrier for lynx

    PNAS 2004 101:10632-10634; published online before print July 12, 2004, doi:10.1073/pnas.0308674101

Evolution

  • Biological Sciences - Evolution:
    • Martin A. Nowak,
    • Franziska Michor,
    • Natalia L. Komarova,
    • and Yoh Iwasa

    Evolutionary dynamics of tumor suppressor gene inactivation

    PNAS 2004 101:10635-10638; published online before print July 13, 2004, doi:10.1073/pnas.0400747101
  • Biological Sciences - Evolution:
    • Kevin G. Helfenbein,
    • H. Matthew Fourcade,
    • Rohit G. Vanjani,
    • and Jeffrey L. Boore

    The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes

    PNAS 2004 101:10639-10643; published online before print July 12, 2004, doi:10.1073/pnas.0400941101
  • Biological Sciences - Evolution:
    • Hans Wildschutte,
    • David M. Wolfe,
    • Aletheia Tamewitz,
    • and Jeffrey G. Lawrence

    Protozoan predation, diversifying selection, and the evolution of antigenic diversity in Salmonella

    PNAS 2004 101:10644-10649; published online before print July 9, 2004, doi:10.1073/pnas.0404028101
  • Biological Sciences - Evolution:
    • Christian Roos,
    • Jürgen Schmitz,
    • and Hans Zischler

    Primate jumping genes elucidate strepsirrhine phylogeny

    PNAS 2004 101:10650-10654; published online before print July 12, 2004, doi:10.1073/pnas.0403852101

Genetics

  • Biological Sciences - Genetics:
    • Marina S. Lee
    • and Forrest A. Spencer

    Bipolar orientation of chromosomes in Saccharomyces cerevisiae is monitored by Mad1 and Mad2, but not by Mad3

    PNAS 2004 101:10655-10660; published online before print July 12, 2004, doi:10.1073/pnas.0404102101
  • Biological Sciences - Genetics:
    • Shoji Fukamachi,
    • Masazumi Sugimoto,
    • Hiroshi Mitani,
    • and Akihiro Shima

    Somatolactin selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells in medaka

    PNAS 2004 101:10661-10666; published online before print July 12, 2004, doi:10.1073/pnas.0401278101
  • Biological Sciences - Genetics:
    • Hideki Innan
    • and Yuseob Kim

    Pattern of polymorphism after strong artificial selection in a domestication event

    PNAS 2004 101:10667-10672; published online before print July 12, 2004, doi:10.1073/pnas.0401720101

Immunology

  • Biological Sciences - Immunology:
    • William Y. Go,
    • Xuebin Liu,
    • Michelle A. Roti,
    • Forrest Liu,
    • and Steffan N. Ho

    NFAT5/TonEBP mutant mice define osmotic stress as a critical feature of the lymphoid microenvironment

    PNAS 2004 101:10673-10678; published online before print July 9, 2004, doi:10.1073/pnas.0403139101
  • Biological Sciences - Immunology:
    • Kathrin S. Michelsen,
    • Michelle H. Wong,
    • Prediman K. Shah,
    • Wenxuan Zhang,
    • Juliana Yano,
    • Terence M. Doherty,
    • Shizuo Akira,
    • Tripathi B. Rajavashisth,
    • and Moshe Arditi

    Lack of Toll-like receptor 4 or myeloid differentiation factor 88 reduces atherosclerosis and alters plaque phenotype in mice deficient in apolipoprotein E

    PNAS 2004 101:10679-10684; published online before print July 12, 2004, doi:10.1073/pnas.0403249101
  • Biological Sciences - Immunology:
    • Karsten Fischer,
    • Emmanuel Scotet,
    • Marcus Niemeyer,
    • Heidrun Koebernick,
    • Jens Zerrahn,
    • Sophie Maillet,
    • Robert Hurwitz,
    • Mischo Kursar,
    • Marc Bonneville,
    • Stefan H. E. Kaufmann,
    • and Ulrich E. Schaible

    Mycobacterial phosphatidylinositol mannoside is a natural antigen for CD1d-restricted T cells

    PNAS 2004 101:10685-10690; published online before print July 8, 2004, doi:10.1073/pnas.0403787101
  • Biological Sciences - Immunology:
    • Yvette E. Latchman,
    • Spencer C. Liang,
    • Yin Wu,
    • Tatyana Chernova,
    • Raymond A. Sobel,
    • Martina Klemm,
    • Vijay K. Kuchroo,
    • Gordon J. Freeman,
    • and Arlene H. Sharpe

    PD-L1-deficient mice show that PD-L1 on T cells, antigen-presenting cells, and host tissues negatively regulates T cells

    PNAS 2004 101:10691