Table of Contents

July 13, 2004; 101 (28)

FROM THE COVER

Commentary

Commentary:
- Mark D. Wewers
IL-1β: An endosomal exit
PNAS 2004 101:10241-10242; published online before print July 6, 2004, doi:10.1073/pnas.0403971101
- See companion article on page 9745 in issue 26 of volume 101

Physical Sciences

Applied Physical Sciences

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Physical Sciences - Applied Physical Sciences - Biological Sciences - Plant Biology:
- M. Léonetti,
- E. Dubois-Violette,
- and F. Homblé
Pattern formation of stationary transcellular ionic currents in Fucus
PNAS 2004 101:10243-10248; published online before print July 1, 2004, doi:10.1073/pnas.0402335101

Chemistry

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Physical Sciences - Chemistry - Biological Sciences - Genetics:
- Marcel Ovidiu Vlad,
- L. Luca Cavalli-Sforza,
- and John Ross
Enhanced (hydrodynamic) transport induced by population growth in reaction–diffusion systems with application to population genetics
PNAS 2004 101:10249-10253; published online before print July 1, 2004, doi:10.1073/pnas.0403419101

Biological Sciences

Biochemistry

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Biological Sciences - Biochemistry:
- Frédéric Eghiaian,
- Jeanne Grosclaude,
- Stéphanie Lesceu,
- Pascale Debey,
- Bénédicte Doublet,
- Eric Tréguer,
- Human Rezaei,
- and Marcel Knossow
Insight into the PrP^C → PrP^Sc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants
PNAS 2004 101:10254-10259; published online before print July 6, 2004, doi:10.1073/pnas.0400014101
Select this article
Biological Sciences - Biochemistry:
- Dragana Korencic,
- Ivan Ahel,
- James Schelert,
- Meik Sacher,
- Benfang Ruan,
- Constantinos Stathopoulos,
- Paul Blum,
- Michael Ibba,
- and Dieter Söll
A freestanding proofreading domain is required for protein synthesis quality control in Archaea
PNAS 2004 101:10260-10265; published online before print July 6, 2004, doi:10.1073/pnas.0403926101
Select this article
Biological Sciences - Biochemistry:
- Ingo Heilmann,
- Mark S. Pidkowich,
- Thomas Girke,
- and John Shanklin
From the Cover: Switching desaturase enzyme specificity by alternate subcellular targeting
PNAS 2004 101:10266-10271; published online before print July 6, 2004, doi:10.1073/pnas.0402200101

Biophysics

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Biological Sciences - Biophysics:
- Yongbo Zhang
- and Erik R. P. Zuiderweg
The 70-kDa heat shock protein chaperone nucleotide-binding domain in solution unveiled as a molecular machine that can reorient its functional subdomains
PNAS 2004 101:10272-10277; published online before print July 1, 2004, doi:10.1073/pnas.0401313101
Select this article
Biological Sciences - Biophysics:
- Martin Margittai
- and Ralf Langen
Template-assisted filament growth by parallel stacking of tau
PNAS 2004 101:10278-10283; published online before print July 6, 2004, doi:10.1073/pnas.0401911101
Select this article
Biological Sciences - Biophysics:
- Sylvie Doublié,
- Viswanath Bandaru,
- Jeffrey P. Bond,
- and Susan S. Wallace
The crystal structure of human endonuclease VIII-like 1 (NEIL1) reveals a zincless finger motif required for glycosylase activity
PNAS 2004 101:10284-10289; published online before print July 1, 2004, doi:10.1073/pnas.0402051101

Cell Biology

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Biological Sciences - Cell Biology:
- David W. Walker
- and Seymour Benzer
From the Cover: Mitochondrial “swirls” induced by oxygen stress and in the Drosophila mutant hyperswirl
PNAS 2004 101:10290-10295; published online before print June 30, 2004, doi:10.1073/pnas.0403767101
Select this article
Biological Sciences - Cell Biology:
- Lei Zhang,
- Ole Gjoerup,
- and Thomas M. Roberts
The serine/threonine kinase cyclin G-associated kinase regulates epidermal growth factor receptor signaling
PNAS 2004 101:10296-10301; published online before print July 6, 2004, doi:10.1073/pnas.0403175101
Select this article
Biological Sciences - Cell Biology:
- Guang W. Wong,
- Jin Wang,
- Christopher Hug,
- Tsu-Shuen Tsao,
- and Harvey F. Lodish
A family of Acrp30/adiponectin structural and functional paralogs
PNAS 2004 101:10302-10307; published online before print July 1, 2004, doi:10.1073/pnas.0403760101
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Biological Sciences - Cell Biology:
- Christopher Hug,
- Jin Wang,
- Naina Shehzeen Ahmad,
- Jonathan S. Bogan,
- Tsu-Shuen Tsao,
- and Harvey F. Lodish
T-cadherin is a receptor for hexameric and high-molecular-weight forms of Acrp30/adiponectin
PNAS 2004 101:10308-10313; published online before print June 21, 2004, doi:10.1073/pnas.0403382101
Select this article
Biological Sciences - Cell Biology:
- Beate F. Krakstad,
- Vandana V. Ardawatia,
- and Anna M. Aragay
A role for Gα₁₂/Gα₁₃ in p120^ctn regulation
PNAS 2004 101:10314-10319; published online before print July 6, 2004, doi:10.1073/pnas.0401366101

Developmental Biology

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Biological Sciences - Developmental Biology:
- Michael Schubert,
- Nicholas D. Holland,
- Hector Escriva,
- Linda Z. Holland,
- and Vincent Laudet
Retinoic acid influences anteroposterior positioning of epidermal sensory neurons and their gene expression in a developing chordate (amphioxus)
PNAS 2004 101:10320-10325; published online before print June 29, 2004, doi:10.1073/pnas.0403216101
Select this article
Biological Sciences - Developmental Biology:
- Toshio Hamatani,
- Takiko Daikoku,
- Haibin Wang,
- Hiromichi Matsumoto,
- Mark G. Carter,
- Minoru S. H. Ko,
- and Sudhansu K. Dey
Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation
PNAS 2004 101:10326-10331; published online before print July 1, 2004, doi:10.1073/pnas.0402597101
Select this article
Biological Sciences - Developmental Biology:
- Wilfried Mai,
- Marc F. Janier,
- Nathalie Allioli,
- Laure Quignodon,
- Thomas Chuzel,
- Frédéric Flamant,
- and Jacques Samarut
Thyroid hormone receptor α is a molecular switch of cardiac function between fetal and postnatal life
PNAS 2004 101:10332-10337; published online before print July 6, 2004, doi:10.1073/pnas.0401843101
Select this article
Biological Sciences - Developmental Biology:
- Yoshiki Hayashi,
- Makoto Hayashi,
- and Satoru Kobayashi
Nanos suppresses somatic cell fate in Drosophila germ line
PNAS 2004 101:10338-10342; published online before print July 6, 2004, doi:10.1073/pnas.0401647101
Select this article
Biological Sciences - Developmental Biology:
- Francesca M. Theriault,
- Priscillia Roy,
- and Stefano Stifani
AML1/Runx1 is important for the development of hindbrain cholinergic branchiovisceral motor neurons and selected cranial sensory neurons
PNAS 2004 101:10343-10348; published online before print July 6, 2004, doi:10.1073/pnas.0400768101

Evolution

Select this article
Biological Sciences - Evolution:
- Elizabeth E. Thomas,
- Nathan Srebro,
- Jonathan Sebat,
- Nicholas Navin,
- John Healy,
- Bud Mishra,
- and Michael Wigler
Distribution of short paired duplications in mammalian genomes
PNAS 2004 101:10349-10354; published online before print July 6, 2004, doi:10.1073/pnas.0403727101
Select this article
Biological Sciences - Evolution:
- Kevin C. Rowe,
- Edward J. Heske,
- Patrick W. Brown,
- and Ken N. Paige
Surviving the ice: Northern refugia and postglacial colonization
PNAS 2004 101:10355-10359; published online before print July 12, 2004, doi:10.1073/pnas.0401338101
Select this article
Biological Sciences - Evolution:
- C. P. Osborne,
- D. J. Beerling,
- B. H. Lomax,
- and W. G. Chaloner
From the Cover: Biophysical constraints on the origin of leaves inferred from the fossil record
PNAS 2004 101:10360-10362; published online before print July 6, 2004, doi:10.1073/pnas.0402787101
Select this article
Biological Sciences - Evolution:
- David M. Shuker
- and Stuart A. West
Information constraints and the precision of adaptation: Sex ratio manipulation in wasps
PNAS 2004 101:10363-10367; published online before print July 6, 2004, doi:10.1073/pnas.0308034101
Select this article
Biological Sciences - Evolution:
- Robert Sutak,
- Pavel Dolezal,
- Heather L. Fiumera,
- Ivan Hrdy,
- Andrew Dancis,
- Maria Delgadillo-Correa,
- Patricia J. Johnson,
- Miklós Müller,
- and Jan Tachezy
From the Cover: Mitochondrial-type assembly of FeS centers in the hydrogenosomes of the amitochondriate eukaryote Trichomonas vaginalis
PNAS 2004 101:10368-10373; published online before print June 29, 2004, doi:10.1073/pnas.0401319101
Select this article
Biological Sciences - Evolution:
- David P. Cowan
- and Julie K. Stahlhut
Functionally reproductive diploid and haploid males in an inbreeding hymenopteran with complementary sex determination
PNAS 2004 101:10374-10379; published online before print July 1, 2004, doi:10.1073/pnas.0402481101

Genetics

Select this article
Physical Sciences - Chemistry - Biological Sciences - Genetics:
- Marcel Ovidiu Vlad,
- L. Luca Cavalli-Sforza,
- and John Ross
Enhanced (hydrodynamic) transport induced by population growth in reaction–diffusion systems with application to population genetics
PNAS 2004 101:10249-10253; published online before print July 1, 2004, doi:10.1073/pnas.0403419101
Select this article
Biological Sciences - Genetics:
- Andrea Ventura,
- Alexander Meissner,
- Christopher P. Dillon,
- Michael McManus,
- Phillip A. Sharp,
- Luk Van Parijs,
- Rudolf Jaenisch,
- and Tyler Jacks
Cre-lox-regulated conditional RNA interference from transgenes
PNAS 2004 101:10380-10385; published online before print July 6, 2004, doi:10.1073/pnas.0403954101
Select this article
Biological Sciences - Genetics:
- Shaw-Hwa Lo
- and Tian Zheng
A demonstration and findings of a statistical approach through reanalysis of inflammatory bowel disease data
PNAS 2004 101:10386-10391; published online before print July 1, 2004, doi:10.1073/pnas.0403662101

Immunology

Select this article
Biological Sciences - Immunology:
- Jeffrey M. Beekman,
- Jantine E. Bakema,
- Jan G. J. van de Winkel,
- and Jeanette H. W. Leusen
Direct interaction between FcγRI (CD64) and periplakin controls receptor endocytosis and ligand binding capacity
PNAS 2004 101:10392-10397; published online before print June 30, 2004, doi:10.1073/pnas.0401217101
Select this article
Biological Sciences - Immunology:
- Silke Paust,
- Linrong Lu,
- Nami McCarty,
- and Harvey Cantor
Engagement of B7 on effector T cells by regulatory T cells prevents autoimmune disease
PNAS 2004 101:10398-10403; published online before print July 2, 2004, doi:10.1073/pnas.0403342101
Select this article
Biological Sciences - Immunology:
- Gianluca Moroncini,
- Nnennaya Kanu,
- Laura Solforosi,
- Gil Abalos,
- Glenn C. Telling,
- Mark Head,
- James Ironside,
- Jeremy P. Brockes,
- Dennis R. Burton,
- and R. Anthony Williamson
Motif-grafted antibodies containing the replicative interface of cellular PrP are specific for PrP^Sc
PNAS 2004 101:10404-10409; published online before print July 6, 2004, doi:10.1073/pnas.0403522101
Select this article
Biological Sciences - Immunology:
- Kristie M. Grebe,
- Raedun L. Clarke,
- and Terry A. Potter
Ligation of CD8 leads to apoptosis of thymocytes that have not undergone positive selection
PNAS 2004 101:10410-10415; published online before print July 1, 2004, doi:10.1073/pnas.0402079101

Medical Sciences

Select this article
Biological Sciences - Medical Sciences:
- M. Rocio A. Carrera,
- Gunnar F. Kaufmann,
- Jenny M. Mee,
- Michael M. Meijler,
- George F. Koob,
- and Kim D. Janda
From the Cover: Treating cocaine addiction with viruses
PNAS 2004 101:10416-10421; published online before print June 28, 2004, doi:10.1073/pnas.0403795101
- See commentary article on page 11193 in issue 31 of volume 101
Select this article
Biological Sciences - Medical Sciences:
- Kohjiro Ueki,
- Tatsuya Kondo,
- Yu-Hua Tseng,
- and C. Ronald Kahn
Central role of suppressors of cytokine signaling proteins in hepatic steatosis, insulin resistance, and the metabolic syndrome in the mouse
PNAS 2004 101:10422-10427; published online before print July 6, 2004, doi:10.1073/pnas.0402511101
Select this article
Biological Sciences - Medical Sciences:
- Laurent Vergnes,
- Miklós Péterfy,
- Martin O. Bergo,
- Stephen G. Young,
- and Karen Reue
Lamin B1 is required for mouse development and nuclear integrity
PNAS 2004 101:10428-10433; published online before print July 1, 2004, doi:10.1073/pnas.0401424101
Select this article
Biological Sciences - Medical Sciences:
- Bulent O. Yildiz,
- Marc A. Suchard,
- Ma-Li Wong,
- Samuel M. McCann,
- and Julio Licinio
Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity
PNAS 2004 101:10434-10439; published online before print July 1, 2004, doi:10.1073/pnas.0403465101
Select this article
Biological Sciences - Medical Sciences:
- Tianqing Kong,
- Holger K. Eltzschig,
- Jorn Karhausen,
- Sean P. Colgan,
- and C. Simon Shelley
Leukocyte adhesion during hypoxia is mediated by HIF-1-dependent induction of β₂ integrin gene expression
PNAS 2004 101:10440-10445; published online before print July 2, 2004, doi:10.1073/pnas.0401339101
Select this article
Biological Sciences - Medical Sciences:
- Xiangqun Gao
- and Paul Talalay
Induction of phase 2 genes by sulforaphane protects retinal pigment epithelial cells against photooxidative damage
PNAS 2004 101:10446-10451; published online before print June 30, 2004, doi:10.1073/pnas.0403886101

Microbiology

Select this article
Biological Sciences - Microbiology:
- H. Chen,
- G. Deng,
- Z. Li,
- G. Tian,
- Y. Li,
- P. Jiao,
- L. Zhang,
- Z. Liu,
- R. G. Webster,
- and K. Yu
The evolution of H5N1 influenza viruses in ducks in southern China
PNAS 2004 101:10452-10457; published online before print July 2, 2004, doi:10.1073/pnas.0403212101

Neuroscience

Select this article
Biological Sciences - Neuroscience:
- Alexander W. Bruce,
- Ian J. Donaldson,
- Ian C. Wood,
- Sally A. Yerbury,
- Michael I. Sadowski,
- Michael Chapman,
- Berthold Göttgens,
- and Noel J. Buckley
Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes
PNAS 2004 101:10458-10463; published online before print July 6, 2004, doi:10.1073/pnas.0401827101
Select this article
Biological Sciences - Neuroscience:
- Nadia De Mota,
- Annabelle Reaux-Le Goazigo,
- Said El Messari,
- Nicolas Chartrel,
- Darren Roesch,
- Cynthia Dujardin,
- Claude Kordon,
- Hubert Vaudry,
- Françoise Moos,
- and Catherine Llorens-Cortes
Apelin, a potent diuretic neuropeptide counteracting vasopressin actions through inhibition of vasopressin neuron activity and vasopressin release
PNAS 2004 101:10464-10469; published online before print July 1, 2004, doi:10.1073/pnas.0403518101
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FROM THE COVER

IL-1β: An endosomal exit

Pattern formation of stationary transcellular ionic currents in Fucus

Enhanced (hydrodynamic) transport induced by population growth in reaction–diffusion systems with application to population genetics

Insight into the PrPC → PrPSc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants

A freestanding proofreading domain is required for protein synthesis quality control in Archaea

From the Cover: Switching desaturase enzyme specificity by alternate subcellular targeting

The 70-kDa heat shock protein chaperone nucleotide-binding domain in solution unveiled as a molecular machine that can reorient its functional subdomains

Template-assisted filament growth by parallel stacking of tau

The crystal structure of human endonuclease VIII-like 1 (NEIL1) reveals a zincless finger motif required for glycosylase activity

From the Cover: Mitochondrial “swirls” induced by oxygen stress and in the Drosophila mutant hyperswirl

The serine/threonine kinase cyclin G-associated kinase regulates epidermal growth factor receptor signaling

A family of Acrp30/adiponectin structural and functional paralogs

T-cadherin is a receptor for hexameric and high-molecular-weight forms of Acrp30/adiponectin

A role for Gα12/Gα13 in p120ctn regulation

Retinoic acid influences anteroposterior positioning of epidermal sensory neurons and their gene expression in a developing chordate (amphioxus)

Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation

Thyroid hormone receptor α is a molecular switch of cardiac function between fetal and postnatal life

Nanos suppresses somatic cell fate in Drosophila germ line

AML1/Runx1 is important for the development of hindbrain cholinergic branchiovisceral motor neurons and selected cranial sensory neurons

Distribution of short paired duplications in mammalian genomes

Surviving the ice: Northern refugia and postglacial colonization

From the Cover: Biophysical constraints on the origin of leaves inferred from the fossil record

Information constraints and the precision of adaptation: Sex ratio manipulation in wasps

From the Cover: Mitochondrial-type assembly of FeS centers in the hydrogenosomes of the amitochondriate eukaryote Trichomonas vaginalis

Functionally reproductive diploid and haploid males in an inbreeding hymenopteran with complementary sex determination

Enhanced (hydrodynamic) transport induced by population growth in reaction–diffusion systems with application to population genetics

Cre-lox-regulated conditional RNA interference from transgenes

A demonstration and findings of a statistical approach through reanalysis of inflammatory bowel disease data

Direct interaction between FcγRI (CD64) and periplakin controls receptor endocytosis and ligand binding capacity

Engagement of B7 on effector T cells by regulatory T cells prevents autoimmune disease

Motif-grafted antibodies containing the replicative interface of cellular PrP are specific for PrPSc

Ligation of CD8 leads to apoptosis of thymocytes that have not undergone positive selection

From the Cover: Treating cocaine addiction with viruses

Central role of suppressors of cytokine signaling proteins in hepatic steatosis, insulin resistance, and the metabolic syndrome in the mouse

Lamin B1 is required for mouse development and nuclear integrity

Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity

Leukocyte adhesion during hypoxia is mediated by HIF-1-dependent induction of β2 integrin gene expression

Induction of phase 2 genes by sulforaphane protects retinal pigment epithelial cells against photooxidative damage

The evolution of H5N1 influenza viruses in ducks in southern China

Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes

Apelin, a potent diuretic neuropeptide counteracting vasopressin actions through inhibition of vasopressin neuron activity and vasopressin release

Insight into the PrP^C → PrP^Sc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants

A role for Gα₁₂/Gα₁₃ in p120^ctn regulation

Motif-grafted antibodies containing the replicative interface of cellular PrP are specific for PrP^Sc

Leukocyte adhesion during hypoxia is mediated by HIF-1-dependent induction of β₂ integrin gene expression